Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09406 ATGGAATTCATGGCTGGAGGTTCTGTTGCTGATCTACTCCAATCCGGTCCTCCACTTGATGAAATGTCAATTGCTTGCATTCTCCGTGACTTGCTTCATGCGATTGATTACCTACATAGTGAAGGAAAAATTCATAGAGACATTAAAGCTGCAAACATTTTATTAACCGAGAATGGTGATGTGAAGGTTGCAGATTTTGGTGTTTCTGCACAGTTAACAAGGACTATATCAAGGAGAAAGACGTTTGTGGGCACACCATTCTGGATGGCACCTGAGGTTATTCAAAATTCTGAAGGATATAATGAGAAGGCAGATATCTGGTCTATGGGGATTACTGCAATTGAGATGGCAAAGGGGGAGCCTCCACTTGCTGATCTTCATCCTATGAGAGTGCTTTTCATCATACCCCGAGAGAATCCACCGCAGCTAGATGAGCATTTTTCTCGTCCCATGAAAGAATTTGTTTCATTGTGTTTGAAGAAGGTTCCTGCTGAGAGGCCAAGTGCTAAGGAACTTCTCAAACACCGTTTCATTCGGAATGCCAGGAAGAGTCCAAAGCTTTTGGAGAGAATAAGGGAGCGTCCAAAGTACCAAATGAAGGAAGATCACGCAGCAGCTAGAAATGGTCCAAGAGGGATAGGGGAGGCATCTGATACTATGAAGGTAGCAAGGGATTTCAGAGTTGAAGAAACTAATCAGCCTAGTGACCAGGGTAAAACCCTGAAAAGTTCTGGGTGGGACTTCAGCATTGGTGGGTCACAGGGTACTGGAACCTTCCGTAGTGTTTCACGGCCACCTCAATTTAGAGATAAGAAAACTGAAGTTTCAAATCATCAGCTCAACCAAAGAAAAATTCCAGAGGGTGGCTATCAAGGGGGATCTGCCAATAGGAGTGTACTTAATGAGTTGCTAGAAACTTCTTCCGGAAAAGATCTTGGAGTTCCCTACCATGATGAGCATCCAGACAATCACCTTGAAGATGATGCATTGCCTGGGAATGGTTCAGGTACTGTTGTTGTTCGGTCTCCAAAAGGATCACAGCCATCGTTGTTTCGTGACCAAAGTTCCCGGTCTAGCAGCAGCTATGCTTCTTTTGAAGATGCTTCTACTAGTGGAACTGTTGTTTTGCGTAGTCCACATGATGATTCTGATTCTCCACAGACACCAAGGTCCCGATTGGGACTTAATAGCAGATATTCAAATTCCTCACTGGAAGATAGTGCCATGAATCTTGCTGAGGCAAAGGCTGCTATCCAAGGAGGACTAAGAAAAGTGAATGCTCGAGAGAGATTTGCCATGGGGAAACTCAACAATGATGTTCAGGAAAACAGGAGAGATCAAATGTCAAGCAGCTCTGATTCTTCCAGACCATCTCGTGAATACATTGATGCACAAAAGGGAATTTCAAGATCACATTATGCTAGTGATGATGAAGAGAGTGCCAAAATAATGTCATCTTCTGTGCCGTTATCTGTTTTGCTTATTCCTTCATTAAAAGAGGCCATTGCTGATGATCCAGAAGGGTCAATTGTGCAAGCTGTTATCAATTCACTTGTAAACATGGAGAGGACCAAGCCTAGATCCTGTGATGTTCTTGTCAAAAAGTTGCTTCAGTTGTTAGCAAGTTCAAAAGAATCTTCATTGAAGGACCTGCAAGAACTAGCATCACAATTATTTAGCAAGACCAAGCCAGCTGAAGAAACCCGAAATACTGCTGAGCCTGACAACAGGAAGAAACAACAGAACAAGGAAGCTCATTCAAATAGCAGTTTAAGCCCACTCGCAAGATTTCTTCTCTCAAGATGGCAAGGCCAAACCTCACGGGATCTAAATCCAGCTTGA 1842 0.4332 MEFMAGGSVADLLQSGPPLDEMSIACILRDLLHAIDYLHSEGKIHRDIKAANILLTENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSMGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKEFVSLCLKKVPAERPSAKELLKHRFIRNARKSPKLLERIRERPKYQMKEDHAAARNGPRGIGEASDTMKVARDFRVEETNQPSDQGKTLKSSGWDFSIGGSQGTGTFRSVSRPPQFRDKKTEVSNHQLNQRKIPEGGYQGGSANRSVLNELLETSSGKDLGVPYHDEHPDNHLEDDALPGNGSGTVVVRSPKGSQPSLFRDQSSRSSSSYASFEDASTSGTVVLRSPHDDSDSPQTPRSRLGLNSRYSNSSLEDSAMNLAEAKAAIQGGLRKVNARERFAMGKLNNDVQENRRDQMSSSSDSSRPSREYIDAQKGISRSHYASDDEESAKIMSSSVPLSVLLIPSLKEAIADDPEGSIVQAVINSLVNMERTKPRSCDVLVKKLLQLLASSKESSLKDLQELASQLFSKTKPAEETRNTAEPDNRKKQQNKEAHSNSSLSPLARFLLSRWQGQTSRDLNPA. 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09406 613 MobiDBLite consensus disorder prediction 566 584 - -
Seca3g09406 613 Pfam Protein kinase domain 1 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09406 613 SMART serkin_6 1 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09406 613 FunFam Serine/threonine-protein kinase 24 4 206 - -
Seca3g09406 613 Gene3D Transferase(Phosphotransferase) domain 1 1 211 - -
Seca3g09406 613 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 1 561 - -
Seca3g09406 613 MobiDBLite consensus disorder prediction 443 458 - -
Seca3g09406 613 MobiDBLite consensus disorder prediction 309 399 - -
Seca3g09406 613 MobiDBLite consensus disorder prediction 197 217 - -
Seca3g09406 613 MobiDBLite consensus disorder prediction 312 327 - -
Seca3g09406 613 MobiDBLite consensus disorder prediction 559 592 - -
Seca3g09406 613 MobiDBLite consensus disorder prediction 434 472 - -
Seca3g09406 613 MobiDBLite consensus disorder prediction 339 399 - -
Seca3g09406 613 SUPERFAMILY Protein kinase-like (PK-like) 1 179 IPR011009 -
Seca3g09406 613 MobiDBLite consensus disorder prediction 229 295 - -
Seca3g09406 613 MobiDBLite consensus disorder prediction 233 263 - -
Seca3g09406 613 ProSiteProfiles Protein kinase domain profile. 1 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09406 Seca-Chr3 234257785 234269524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09406 1 610 MAP Kinase Kinase Kinase Kinase AT3G15220 62.908 0.0 736
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Seca3g09406 Pkinase 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09406 K08838 - gmx:100786501 1045.8