Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09402 ATGGAGGCCAGGAGTATTGAGAGGAAGAGAGCATTCATGATGGAGAAGGTGAGAAAGAATAGCACAGTTGAAGAAGAAGTGGAAAATGAAGTAGAAGAGGAGGATGAAAGTGGTGGTGTGGATGTTAGTATCACAGAAGAAGAGAAGAAGAAAGGGGTAGGTGGTGGTGGGAGAAGAGGATCAAGTGGTGGTGGAGGTGTTTCTCCACCTTCCTGCCAAGCTGAGAGGTGTGGAGCTGATTTGACTGATGCGAAGAGATACCATCGCCGCCATAAGGTCTGTGAGTTCCATTCCAAGGCACCTGTTGTGGTGGTTGCAGGGCAGAGACAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGACCTGGCTGAGTTTGATGAAGCTAAAAGAAGCTGCCGCAGGCGCTTGGCCGGACACAATGAACGGCGCCGGAAAAGCAACCCGGAAGCTGCCAATGAAGGGTCCAGCCATGGAAAAGGCCATCATCATCCTAAGGAAACACAGTGCAGGCTTGCTGATGAGAGGGGAAGAATTCAGATGAACATGCCAGGGAGTTCTGGCTATAAGTCTTTCAATATCAGGTGA 585 0.4991 MEARSIERKRAFMMEKVRKNSTVEEEVENEVEEEDESGGVDVSITEEEKKKGVGGGGRRGSSGGGGVSPPSCQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVAGQRQRFCQQCSRFHDLAEFDEAKRSCRRRLAGHNERRRKSNPEAANEGSSHGKGHHHPKETQCRLADERGRIQMNMPGSSGYKSFNIR. 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09402 194 Gene3D - 63 133 IPR036893 GO:0003677|GO:0005634
Seca3g09402 194 MobiDBLite consensus disorder prediction 136 194 - -
Seca3g09402 194 MobiDBLite consensus disorder prediction 18 74 - -
Seca3g09402 194 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 53 157 IPR044817 GO:0003677
Seca3g09402 194 MobiDBLite consensus disorder prediction 142 173 - -
Seca3g09402 194 MobiDBLite consensus disorder prediction 26 41 - -
Seca3g09402 194 Pfam SBP domain 72 145 IPR004333 GO:0003677
Seca3g09402 194 ProSiteProfiles Zinc finger SBP-type profile. 69 146 IPR004333 GO:0003677
Seca3g09402 194 FunFam Squamosa promoter-binding-like protein 14 64 133 - -
Seca3g09402 194 SUPERFAMILY SBT domain 70 150 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09402 Seca-Chr3 234167520 234168828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09402 1 194 SBP-box Gene Family AT3G15270 46.154 2.76e-40 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca3g09402 SBP 9.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09402 - - aprc:113864686 264.233