Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09400 ATGAATGGTTCAACATCCATAATCAAACCTGATGTGTTGGTCTCTGCTTCTGAAAATGGATCTACTATTAACTCGAAAGAAGCAATGTCTCCTTGTTCAGTTGGCACTTGCATCGAGGATGATCTTGGTACCACGAGTGGTCACTCACTTTATGATGATACCATTGGGAATGACCTGCTCTCCACCTTCTTCAATATGGATAAACCAAACCCATCCTCTGGTGCTCCTACATCTACTGCAGATAACTTTGTTGTTGCTAGTGGTACTACCAATATCAATGAAAGGCTTGACGTTGGGTGCCAACATAGCCAATTTATGAATGGTTCAACATCCATCATCAACCCTGACATATTGGTATCTGCTTCTGAAATTGGCTCTACTATGAACTCAAGAGAAGCAATGTCTTCTTTTTCTATTGGTACTTGCATCAACGATGATCTTGGCACCATGGATAGTCACTCACTCTCCAGTGGCACCATTGATGAACACTTGCGCTCCACCTACCTCAATATGGATAAAATAAACCCATCTTCTGGTGCCCTTGCATCTGCTGTAGATAACTTTTCTATTTCTATTGGTACTACCAATATGAATGAAAGGCTTGACGTTGGGTCCCGAGATAGCCAGTTTATGAATGGTTCAACATCCATAATCAAACCGGACATGCTGGTCTCTGCTTTTGAAAATGGCTATACTATTAACTCAAAACAAACAACGTCTGCTTTTTCTATTGGTACTTGGATCGATGATGATCTTGGTACCATGGATGGTCACTCACTCTATGATGATACCACTAACAAGGACATGCTCTCCACTTACCTCAATATAGATAAACTAAACCCATCCTCTTGTGATCCTGCATCTACTGCAGACAACTTTGCTATTGCTAGTGGTACTACCAATATCAATGAAAGGCTTGGCGTTGGGTCCCAACATAGCCAATTTATGAATGGTTCAACATCCATCATCAAACCTGACATGTTGGTCTCTGCTTCTGAAAATGGATCTACTATTAACTCAAGAAAAGCAAAGTCTGCTACTGAGATTGCGGAGCTTGCCTTGGTTGACCCCAAGCGTGCTAAAAGGATTTTGGCAAATAGACAGTCTGCTATAAGATCAAAGGAAAAGCAGGCGCATTACATTTCAGAGCTTGAAAAGAAGGTGCAAACATTGGAAACTGAAAAGGCATCCCTATCTACACAGTTAACTATCTCGCAAAGGGATACTCAAAGAAAGTATGATGAGAATAATGAGTTAGGGTTGGGGTTGCAAACACTGATACAACTTCAATTGGATGACGAGGAAATTCAACATCTTGAAGTACAAGCTATGCAAGCTATGCTAAATGAAGAACATATGAACTCTGCTGCATGTGGAAGAGGGCAACAATACTATCTCAATGAACAGGCCATGCATCCTATTTTAGCTACACAACAGTTACAACAACTTCAAAGTCATTCCCAGAACCAACAACACCAACTTCAAGAACATCAATTACATCAGCAACACCAACAGCAACCACAACCACAACCACAACAGCACCAGTGCCAAAACCCACAACAAGAGGAGAAGGAGCAACAACATCAATAG 1590 0.4119 MNGSTSIIKPDVLVSASENGSTINSKEAMSPCSVGTCIEDDLGTTSGHSLYDDTIGNDLLSTFFNMDKPNPSSGAPTSTADNFVVASGTTNINERLDVGCQHSQFMNGSTSIINPDILVSASEIGSTMNSREAMSSFSIGTCINDDLGTMDSHSLSSGTIDEHLRSTYLNMDKINPSSGALASAVDNFSISIGTTNMNERLDVGSRDSQFMNGSTSIIKPDMLVSAFENGYTINSKQTTSAFSIGTWIDDDLGTMDGHSLYDDTTNKDMLSTYLNIDKLNPSSCDPASTADNFAIASGTTNINERLGVGSQHSQFMNGSTSIIKPDMLVSASENGSTINSRKAKSATEIAELALVDPKRAKRILANRQSAIRSKEKQAHYISELEKKVQTLETEKASLSTQLTISQRDTQRKYDENNELGLGLQTLIQLQLDDEEIQHLEVQAMQAMLNEEHMNSAACGRGQQYYLNEQAMHPILATQQLQQLQSHSQNQQHQLQEHQLHQQHQQQPQPQPQQHQCQNPQQEEKEQQHQ. 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09400 529 Coils Coil 374 401 - -
Seca3g09400 529 SMART brlzneu 354 418 IPR004827 GO:0003700|GO:0006355
Seca3g09400 529 Gene3D - 357 412 - -
Seca3g09400 529 Pfam bZIP transcription factor 358 406 IPR004827 GO:0003700|GO:0006355
Seca3g09400 529 CDD bZIP_plant_RF2 359 410 IPR044759 GO:0003700|GO:0006355
Seca3g09400 529 MobiDBLite consensus disorder prediction 480 529 - -
Seca3g09400 529 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 131 522 - -
Seca3g09400 529 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 356 419 IPR004827 GO:0003700|GO:0006355
Seca3g09400 529 MobiDBLite consensus disorder prediction 480 520 - -
Seca3g09400 529 SUPERFAMILY Leucine zipper domain 358 409 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09400 Seca-Chr3 234102327 234105101 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09400 248 476 bZIP Transcription Factor Family AT1G06070 48.221 1.01e-56 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca3g09400 bZIP_1 1e-06 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09400 - - qsu:112034768 193.741