Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09399 ATGGATGGTCACTCACTCTCAGGTGGCACCATTGAGAAAGACTCGCTCTTCACCTACCTGAATATGGATAAACTAAACCCATCCCCTGGTGCCCTTGCATCTGATGTAGACAACTTTTCTATTGCTATTGGTAGTACCAATATCAATGAAAGAATTGATGTTGGGTCCCAACATAGCCTATTTATGAATGGTTCAACATCCATAATCAAACCTGATGTGTTGGTCTCTGCTTCTGAAAATGGATCTAATATTAACTCGAAAGAAGCAATGTCTCCTTTTTCAGTTGGTACTTGCATCGAGGATGATCTTGGTACCACGAGTGGTCACTCACTTTATGATGATACCATTGGGAATGACCTGCTCTCCACCTTCTTCAATATGGATAAACCAAACCCATCCTCTGGTGCTCCTGCATCTACTGCAGATAACTTTGTTGTTGCTAGTGGTACTACCAATATCAATGAAAGGCTTGACGTTGGGTGCCAACATAGCCAATTTATGAATGGTTCAACATCCATCATCAACCCTGACATATTGGTATCTGCTTCTGAAATTGGCTCTACTATGAACTCAAGAGAAGCAATGTCTGCTTTTTCTATTGGTACTTGCATCAACGATGATCTTGGCACCATGGATAGTCACTCACTCTCCAGTGGCACCATTGATGAACACTTGCGCTCCACCTACCTCAATATGGATAAAATAAACCCATCTTCCGGTGCCCTTGCATCTGCTGTAGATAACTTTTCTATTTCTATTGGTACTACCAATATGAATGAAAGGCTTGACGTTGGGTCCCGAGATAGCCAGTTTATGAATGGTTCAACATCCATAATCAAACCGGACATGCTGGTCTCTGCTTTTGAAAATGGCTATACTATTAACTCAAAACAAACAACGTCTGCTTTTTCTATTGGTACTTGGATCGATGATGATCTTGGTACCATGGATGGTCACTCACTCTATGATGATACCACTAACAAGGACATGCTCTCCACTTACCTCAATATAGATAAACTAAACCCATCCTCTTGTGATCCTGCATCTACTGCAGACAACTTTGCTATTGCTAGTGGTACTACCAATATCAATGAAAGGCTTGGCGTTGGGTCCCAACATAGCCAATTTATGAATGGTTCAACATCCATCATCAAACCTGACATGTTGGTCTCTGCTTCTGAAAATGGATCTATTATTAACTCAAGAAAAGCAAAGTCTGCTACTGAGATTGCGGAGCTTGCCTTGGTTGACCCCAAGCGTGCTAAAAGGATTTTGGCAAATAGACAGTCTGCTATAAGATCAAAGGAAAAGAAAGCGCATTACATTTCAGAGCTTGAAAAGAAGGTGCAAACATTGGAAACTGAAAAGGCATCCCTATCTACACAGTTAACTATCTCGCAAAGGGATACTCAAAGAAAGTATGATGAGAATAATGAGTTAGGGTTGGGGTTGCAAACACTGATACAACAACTTCAATTGGATGACGAGGAAATTCAACATCTTGAAGTACAAGCTATGCAAGCTATGCTAAATGAAGAACATATGAACTCTGCTGCATGTGGAAGAGGGCAACAATACTATCTCAATGAACAGGCCATGCATCCTATTTTAGCTACACAACAGTTACAACAACTTCAAAGTCATTCCCAGAACCAACAACACCAACTTCAAGAACATCAATTACATCAGCAACACCAACAGCAACCACAACCACAACAGCACCAGTGCCAAAACCCACAACAAGAGGAGAAGGAGCAACAACATTAA 1767 0.4109 MDGHSLSGGTIEKDSLFTYLNMDKLNPSPGALASDVDNFSIAIGSTNINERIDVGSQHSLFMNGSTSIIKPDVLVSASENGSNINSKEAMSPFSVGTCIEDDLGTTSGHSLYDDTIGNDLLSTFFNMDKPNPSSGAPASTADNFVVASGTTNINERLDVGCQHSQFMNGSTSIINPDILVSASEIGSTMNSREAMSAFSIGTCINDDLGTMDSHSLSSGTIDEHLRSTYLNMDKINPSSGALASAVDNFSISIGTTNMNERLDVGSRDSQFMNGSTSIIKPDMLVSAFENGYTINSKQTTSAFSIGTWIDDDLGTMDGHSLYDDTTNKDMLSTYLNIDKLNPSSCDPASTADNFAIASGTTNINERLGVGSQHSQFMNGSTSIIKPDMLVSASENGSIINSRKAKSATEIAELALVDPKRAKRILANRQSAIRSKEKKAHYISELEKKVQTLETEKASLSTQLTISQRDTQRKYDENNELGLGLQTLIQQLQLDDEEIQHLEVQAMQAMLNEEHMNSAACGRGQQYYLNEQAMHPILATQQLQQLQSHSQNQQHQLQEHQLHQQHQQQPQPQQHQCQNPQQEEKEQQH. 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09399 588 SMART brlzneu 415 479 IPR004827 GO:0003700|GO:0006355
Seca3g09399 588 MobiDBLite consensus disorder prediction 542 588 - -
Seca3g09399 588 SUPERFAMILY Leucine zipper domain 419 470 IPR046347 GO:0003700|GO:0006355
Seca3g09399 588 Gene3D - 418 473 - -
Seca3g09399 588 Coils Coil 484 504 - -
Seca3g09399 588 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 417 480 IPR004827 GO:0003700|GO:0006355
Seca3g09399 588 Coils Coil 435 462 - -
Seca3g09399 588 CDD bZIP_plant_RF2 420 471 IPR044759 GO:0003700|GO:0006355
Seca3g09399 588 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 223 582 - -
Seca3g09399 588 Pfam bZIP transcription factor 419 467 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09399 Seca-Chr3 234078418 234081372 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09399 309 538 bZIP Transcription Factor Family AT1G06070 48.617 1.02e-58 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca3g09399 bZIP_1 1e-07 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09399 - - qsu:112034768 191.43