Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09323 ATGCAGCAGGAGATGGCAGACATGGAGTCTCAAACTACTTTCAAAGCAACAGTGCAGGAGGAAGCACCTAATATCTTTCATAAGGGAAATCCTCCAGTGACACTCAAGTTTCATGATGTTGTATATAAAATGAAGACCACAAAGTATGGATTACTTGAGAAGAACACAAAGGCAGAAGAGAAAGTGATATTGAATGGAGTGACAGGTATGGTTCAACCTGGTGAAGTTCTGGCCATGTTAGGTCCATCTGGAAGTGGAAAAACAACTCTGTTAACAGCATTGGGAGGGAGGCTTGGAGGGCAACTTTATGGAAACATAACTTACAATGGAAAACCCTTCTCAAATGCAATGAAGAGGAAAACTGGCTTTGTCACCCAAGATGATGTTCTCTATCCCCACTTGACTGTGACTGAAACTTTAGTATTTAGTGCCCTTCTGAGATTACCTTGTAGTTTCACCAAAGAAGAGAAAATTGCACATGCAAAATCTGTGATAGCTCAGCTTGGTTTAACCAAGTGCAAGGATAGCATCATTGGAGGCCCAACACTGAGAGGGGTTTCTGGTGGGGAAAGGAAAAGGGTTAGCATTGGACAAGAAATGCTCATAAACCCAAGCTTGTTGTTTCTAGATGAACCTACCTCTGGCCTAGACTCAACAACAGCTCAAAGAATTGTCTCAACTTTGTGGGAGTTAGCAAGTGGAGGGAGAACTATTGTGATGACAATACACCAACCTTCAAGTAGGATCTACCACATGTTTCACAGGTTGTTGCTGCTATCAGAAGGGATTCCATTGTATTTTGGAAAAGGATCTGAAGCTATGGAATATTTTTCCAATATTGGATATGCCCCTGCAATGGCCATGAACCCCTCAGATTTCCTTTTGGATCTTGCAAATGGTGTCTGTGCTGATCAATCGAATGAGGACCATACCTTAAATAAGCATAAATTGATTTCTGAATATAAGAACTATTTTGATGCCAAATTGAAGCCAATTCTTCATGAAATTCATGACTATGATAAAAGTCAGGGTAGATTTGAAGACAGTGGCTATGGGAAATGGTCTGCCAATTGGTGGCAACAATTCATTGTGCTACTAAAAAGAGATGTCAAAGAGAGAAAATATGAATCATTCTCTGGCATACGGATTTGTCAGATCCTCATGGCTTCCCTTATTACAGGACTACTTTGGTATAAGTCTGATATTTCACACTTACAAGATCAGGTAAGAATTTTCAATTAA 1242 0.401 MQQEMADMESQTTFKATVQEEAPNIFHKGNPPVTLKFHDVVYKMKTTKYGLLEKNTKAEEKVILNGVTGMVQPGEVLAMLGPSGSGKTTLLTALGGRLGGQLYGNITYNGKPFSNAMKRKTGFVTQDDVLYPHLTVTETLVFSALLRLPCSFTKEEKIAHAKSVIAQLGLTKCKDSIIGGPTLRGVSGGERKRVSIGQEMLINPSLLFLDEPTSGLDSTTAQRIVSTLWELASGGRTIVMTIHQPSSRIYHMFHRLLLLSEGIPLYFGKGSEAMEYFSNIGYAPAMAMNPSDFLLDLANGVCADQSNEDHTLNKHKLISEYKNYFDAKLKPILHEIHDYDKSQGRFEDSGYGKWSANWWQQFIVLLKRDVKERKYESFSGIRICQILMASLITGLLWYKSDISHLQDQVRIFN. 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09323 413 Pfam ABC transporter 64 214 IPR003439 GO:0005524
Seca3g09323 413 Gene3D - 51 281 IPR027417 -
Seca3g09323 413 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 18 412 - -
Seca3g09323 413 SMART AAA_5 73 264 IPR003593 GO:0016887
Seca3g09323 413 CDD ABCG_EPDR 32 268 - -
Seca3g09323 413 Pfam ABC-2 type transporter 243 314 IPR043926 GO:0140359
Seca3g09323 413 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 35 286 IPR003439 GO:0005524
Seca3g09323 413 ProSitePatterns ABC transporters family signature. 186 200 IPR017871 GO:0005524|GO:0016887
Seca3g09323 413 FunFam ABC transporter G family member 22 51 280 - -
Seca3g09323 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 280 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09323 Seca-Chr3 233080720 233083370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09323 63 247 Calmodulin-binding Proteins AT2G36910 28.571 1.28e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09323 K05681 - gmx:100812397 640.958