Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09322 ATGGGAGTTCCAGAGAAGGACCCTCTCGCACAATTGAGCTTACCACCTGGTTTCAGATTCTATCCCACCGATGAGGAACTTCTTGTTCAGTACCTTTGCCGCAAGGTTGCTGGCCACCATTTTTCTCTGCCAATCATCGCTGAAATCGATTTGTACAAATTCGATCCTTGGATCCTTCCAGGGAAGGCGATTTTCGGTGAGAAAGAATGGTACTTTTTCAGCCCTAGGGACAGGAAGTACCCAAATGGTTCAAGACCAAACAGAGTAGCTGGCTCTGGTTACTGGAAAGCCACAGGAACTGACAAAATCATCACCACTGAAGGGAGAAAAGTTGGTATTAAAAAGGCACTTGTTTTCTACATTGGCAAAGCACCAAAAGGCACCAAAACAAATTGGATTATGCACGAGTATCGTCTTCTAGACTCTTCTAGAAAGAACAACCTTGGCAGCTCCAAACTTGATGATTGGGTTCTCTGTCGCATATACAATAAAAAGAGCTCGAGCTTGCAAAAGGAAGCGATTCCAACGTTTTCGAGCAAAGAATACAGCAACGTTTCTTCTTCGCCTTCTTCTTCATCCCACGTGGACGACATGCTTGACTTGCCGGAAATCGATGACCGTTGCTTCGCCCTGCCACGTGTGAACTCGCTCCGAAATTTCCAAAACGACGAGAAGCTCGGGTTTCAGAACATGGGTGGTGGAATTTTCGGGGATTGGGTTAACCCGACGGATCTTGATTCGGTACCCGAGTTTGTTACGGGTCAGGGGATGGTGAATTACGGTTGTAATGACCTTTATGCCCCTTCGGTTCCGCAGTTTAGCCACGTGGACTTGTCGGTTGAGGAGGAGGTTCAGAGCGGTGTGAGGAGGAGTACCCAACCGGTTACCGATAGTTCCGGGTATTTTCAGCAGAATCCGAATGCGTTCTCACAGAGGTTGTTACCGTGTCAACCTGACCCGTTTGGGTTCGGATACTCGGGCCAGCAATTCGGGTTCGGGTTCCGAGATTGA 1011 0.4817 MGVPEKDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEIDLYKFDPWILPGKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRLLDSSRKNNLGSSKLDDWVLCRIYNKKSSSLQKEAIPTFSSKEYSNVSSSPSSSSHVDDMLDLPEIDDRCFALPRVNSLRNFQNDEKLGFQNMGGGIFGDWVNPTDLDSVPEFVTGQGMVNYGCNDLYAPSVPQFSHVDLSVEEEVQSGVRRSTQPVTDSSGYFQQNPNAFSQRLLPCQPDPFGFGYSGQQFGFGFRD. 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09322 336 ProSiteProfiles NAC domain profile. 14 164 IPR003441 GO:0003677|GO:0006355
Seca3g09322 336 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Seca3g09322 336 Gene3D NAC domain 23 169 IPR036093 GO:0003677|GO:0006355
Seca3g09322 336 PANTHER NAC TRANSCRIPTION FACTOR 56 14 186 - -
Seca3g09322 336 SUPERFAMILY NAC domain 10 164 IPR036093 GO:0003677|GO:0006355
Seca3g09322 336 FunFam NAC domain-containing protein 72-like 23 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09322 Seca-Chr3 233072362 233074062 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09322 1 332 NAC Transcription Factor Family AT4G27410 57.102 8.60e-119 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca3g09322 NAM 9.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09322 - - gmx:100811301 503.056