Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09321 ATGGAGAGCACCGACTCATCCACGAGTTCGCAACAACCAAATCTGCCACCTGGGTTTCGGTTCCACCCCACCGATGAGGAACTTGTTGTTCACTATCTCAAGAAGAAGGTTGCCTCTGCTCCTCTCCCTGTTTCCATCATAGCTGATATTGATCTCTACAAGTTTGATCCATGGGAATTACCAGCTAAGGCATCGTTTGGAGAGGAAGAATGGTACTTTTTTAGCCCAAGGGATAGAAAATACCCAAACGGTGCAAGGCCAAACAGGGCTGCAATTTCTGGGTATTGGAAGGCTACAGGAACTGATAAGCCTGTGATGACCTCTGGTGGAACCCAAAGGGTTGGTGTGAAGAAATCTTTGGTCTTTTATGGTGGGAAGCCACCAAAAGGGGTGAAGACTCAATGGATCATGCATGAGTATCGTCTCGTTGATAACAAGCCTAACAATAAACCTCTTGGATATGACTTGGGCAACAAGAAAAACCCTCTAAGGCTGGATGATTGGGTGTTATGCAGGATCTACAAGAAGAGCTATACTACACATAATTCTCCTATGGACCATGAGAGGGATGATTCCATAGATGACATGATTAGAGGGGTACCTCCTTCAATCAATGTGGGCCAAATGAATGCGAGGTTTCACCTTTCAATGATGTCCACAAACTACAGTGCTGCATTGTTGGAAAATGACCGAAATGCTTTGGAAGGTGTGATCATAGGCAATGGTGGGATCAACACAACAAGTTCCATATCTACTCAGTTAGGAGCATCAAACTCAAAGGCAGAGCTTATTCCTTTTGTTCCAACTATCAATGCCTCTTCAAATACTACAACTTTAGCCTCCAAAAGAACACTCTCATCACTCTATTGGAATGATGAGGACCATGTGGTTGGCACCTCATTACCTAATAAACAGTTCAGTTTGGACAATGGTGGGAACAATGGCAATGTTGTGAATGACACTACTAATGGTTCTATTGCTACTACTCTGTTGCTTAACCAGCTCCCACAAACACCTTCATTGCACCAACAGACAATGTTGGGGTCTATAGGAGATGGGCTACTTAGGACACCATATCAAATACAAGGGATGAATTGGTTTGGTTAA 1107 0.4372 MESTDSSTSSQQPNLPPGFRFHPTDEELVVHYLKKKVASAPLPVSIIADIDLYKFDPWELPAKASFGEEEWYFFSPRDRKYPNGARPNRAAISGYWKATGTDKPVMTSGGTQRVGVKKSLVFYGGKPPKGVKTQWIMHEYRLVDNKPNNKPLGYDLGNKKNPLRLDDWVLCRIYKKSYTTHNSPMDHERDDSIDDMIRGVPPSINVGQMNARFHLSMMSTNYSAALLENDRNALEGVIIGNGGINTTSSISTQLGASNSKAELIPFVPTINASSNTTTLASKRTLSSLYWNDEDHVVGTSLPNKQFSLDNGGNNGNVVNDTTNGSIATTLLLNQLPQTPSLHQQTMLGSIGDGLLRTPYQIQGMNWFG. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09321 368 Gene3D NAC domain 24 180 IPR036093 GO:0003677|GO:0006355
Seca3g09321 368 ProSiteProfiles NAC domain profile. 15 176 IPR003441 GO:0003677|GO:0006355
Seca3g09321 368 MobiDBLite consensus disorder prediction 1 20 - -
Seca3g09321 368 MobiDBLite consensus disorder prediction 1 17 - -
Seca3g09321 368 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Seca3g09321 368 SUPERFAMILY NAC domain 6 176 IPR036093 GO:0003677|GO:0006355
Seca3g09321 368 FunFam NAC transcription factor 56 24 181 - -
Seca3g09321 368 PANTHER NAC TRANSCRIPTION FACTOR 56 15 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09321 Seca-Chr3 233028581 233030449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09321 1 367 NAC Transcription Factor Family AT3G15510 51.459 1.17e-116 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca3g09321 NAM 1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09321 - - vra:106763825 534.258