Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09318 ATGGCTACTTTTGTTCCTAAATTGTCCACATTAACAGTCTTCCTCTGCCTTGCTTTTCTGCTTTTCTCCACCAACGAGATACAAATTGTGGGAGCAGTTTGTACAAAGCGAAGTGAAAAATGGTCAGGACCTTGTTTCTCTAGTAGCTCCTGCGCTAATGTGTGTAGGGATGAGGAGGGTGGAACTGGGGGTTCCTGTTATGGGATAATTTGTATGTGCATCGGCACATGCAAGAAGTGA 240 0.4458 MATFVPKLSTLTVFLCLAFLLFSTNEIQIVGAVCTKRSEKWSGPCFSSSSCANVCRDEEGGTGGSCYGIICMCIGTCKK. 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09318 79 CDD Knot1 43 74 IPR003614 GO:0006952
Seca3g09318 79 ProSitePatterns Gamma-thionins family signature. 32 55 IPR008176 GO:0006952
Seca3g09318 79 Gene3D - 32 77 IPR036574 -
Seca3g09318 79 Pfam Gamma-thionin family 33 77 - -
Seca3g09318 79 PANTHER DEFENSIN-LIKE PROTEIN 1 10 74 - -
Seca3g09318 79 SUPERFAMILY Scorpion toxin-like 33 77 IPR036574 -
Seca3g09318 79 SMART gth_4 33 77 IPR003614 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09318 Seca-Chr3 233016814 233017671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09318 10 77 Plant Defensins Gene Families AT1G19610 35.616 7.00e-10 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09318 - - lja:Lj3g3v0720000.1 68.9366