Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09305 ATGACTATCGTTATGGATAACATTAATGAAAACGTTGGTGAGAATGTTGTTGGGTTGGAAGAAATTGAAAGTGAAGATGATTGTGAGAATGCATTTCATTTTGACTCTCGTGAATTTGTTCTTGGGGTGGATTCTGAGGCAGATTTTGTTGACCTTAATCCTAAGTTGTTAACTGAGGAAAACGTGAAGAATTTAAATTTTCCTAATTTGGATGTTGCTTATAAATTTTACAATAATTGGTATGGAAAATTGAAGGGTTTTTCAGCACGAAAGGGAAAAGAACGTAAAAATGGAATGGAAGAAATTATTGAGAAGACCTATCTTTGCCATAGGGAAGGAAAGAGACCAATTAATACGAATGAAAGGACCGGGAAGAAAAAACGTGAAGCAAAGCCTGAGACAAGGTGTTTATGTCCTGCAAAAATGAAGGTTCGGTTAGATGTACATTCTGGCCGTTGGAACGTGACCAAGTTTTGTGATGCCCATAATCATGAAATGCTGAACCCCAAATACACAGGGATGCTACCGGCTCATAGGAAATTGAGTGAAGCTGATATCTTGGAGATGAATAACATGCGGAATGCAGGTATTACTACACCTCAAATTTATGGGTCATTTGCCAGCCAATCTGGTGGGTACAACAATGTTGGTTTTCGGAAAAGAGATCTTTACAATGAGATTGGTAGGCAAAGAATGTTGCAGCTAAGTGATGCTAAGGGTGCAATTAAGCACCTACGTGAAAGGGAGCAGAATGAAGGGTCAATGTTTTGGAGGCACACGACTGACTCAGAAGGCCGACTCCAGCGATTATTTTGGTGTGACGGTCAGTGCCAAGTTGATTACAAATTATTTGGTGATGTCCTTGCCTTTGATGCCACATACCGTAAGAACAAATATCATTTTCCTTTGGTAGTGTTTTCTGGCATAAACCACCATAATCAAAGCACAATATTTGCTAGTTGCCTGGTTGCAGATGAAACTGAGGAAACTTATGTTTGGGTTTTGGAACAGTTGATGGTGGCAATGAAAGGCAAGATGCCTTCAGCCGTGATAACAGATGGTGATCTTGCTATGCGGAATGCTATCAAAAGAGTGCTTCCTAATGCACACCATAGGCTTTGTGCATGGCACCTGTGTCGTAATGCTGCTAGTAATGTTAAAAATCCTAAGATGGTTTCGATGTTTAGGAAATGTATGTTGGGTGACTATGAGGTGTCTGAGTTTAAACACAGGTGGGAGGTAATGGTGAAGGAATTTCGACTTGAGGAAAACAATTGGGTGAAGGAATTGTATGAGAAAAAGAGGATGTGGGCCACAACATACATTAGGGGAAATTTCTTTGCCGGGTTTAGGACAACGTCTCGATGTGAGGGGCTTCATGGGCAACTTGGGAAGTTTGTTCACTCCCGGACCGATTTGGTTGGTTTTCTGAAAAATTATGGTCGTTTCCTTGAAGTACTAAGGTATAATGAGTTAGAAGCAGATTTTGAATCAGTACGTGGTGAAATGGTCCTTGAGACTAACTTGCATGCACTAGAGAGATCAGCCTCTAAGATTTTCACAAAGGAGGTTTTCATATTGGTACGGCCCGCCCTTGCCAGGGGAAGCACTATGAGGGTCATGGGCTGTACACAGTTGATGTCACAAACCATTTTCACAGTGTCCAAGTATGGTAGATCACAGAAGGAGTGGCAAGTGTCATATATTGCAGAACCACTTTTCCTTAAATGTTCTTGTCAAAGAATGGAATCTTTTGGTCTTCCTTGTGATCACATAATTGGTGTGATGGTACACTTGAACATACAAGAGATGCCGAAGTGTCTTGTGCTCAGTAGGTGGACCATGGGTGTGAAGGATAGTGCTTATGAAATTAGGGATGGACGCAACTCGATTTGGGATTCTGTGTTTGATGCACGTTGTGGTTATTTGGACTTTTTGTGTAAGAAGATGAATAGATTGGGGGGTAGATCTGCTACAAGATTCAACGAGATTAAGGACTGGGTTAGCACAAAAATAAACCTGTATAGTGAAGCACATTTGACTAGTGGTGATTGGAATGAAAATGGTACGGATGAAGGTGGTCCAACATTGAAAGATCCAATTAGAGTTGGTTCAAAGGGATGTGCAACTGGTTCATCGTCACAAGCAAGAAGACGACCCCACAAATGTAGGCAATGTGGGGTTGCTGGTCACAACCGAACTACTTGTCCAAAGAAGACTAAATATGAGGCGTCTATAGAGTTGGGAAAGTGTGAAGGTGAAATGAGCCAGGGTTAA 2277 0.4133 MTIVMDNINENVGENVVGLEEIESEDDCENAFHFDSREFVLGVDSEADFVDLNPKLLTEENVKNLNFPNLDVAYKFYNNWYGKLKGFSARKGKERKNGMEEIIEKTYLCHREGKRPINTNERTGKKKREAKPETRCLCPAKMKVRLDVHSGRWNVTKFCDAHNHEMLNPKYTGMLPAHRKLSEADILEMNNMRNAGITTPQIYGSFASQSGGYNNVGFRKRDLYNEIGRQRMLQLSDAKGAIKHLREREQNEGSMFWRHTTDSEGRLQRLFWCDGQCQVDYKLFGDVLAFDATYRKNKYHFPLVVFSGINHHNQSTIFASCLVADETEETYVWVLEQLMVAMKGKMPSAVITDGDLAMRNAIKRVLPNAHHRLCAWHLCRNAASNVKNPKMVSMFRKCMLGDYEVSEFKHRWEVMVKEFRLEENNWVKELYEKKRMWATTYIRGNFFAGFRTTSRCEGLHGQLGKFVHSRTDLVGFLKNYGRFLEVLRYNELEADFESVRGEMVLETNLHALERSASKIFTKEVFILVRPALARGSTMRVMGCTQLMSQTIFTVSKYGRSQKEWQVSYIAEPLFLKCSCQRMESFGLPCDHIIGVMVHLNIQEMPKCLVLSRWTMGVKDSAYEIRDGRNSIWDSVFDARCGYLDFLCKKMNRLGGRSATRFNEIKDWVSTKINLYSEAHLTSGDWNENGTDEGGPTLKDPIRVGSKGCATGSSSQARRRPHKCRQCGVAGHNRTTCPKKTKYEASIELGKCEGEMSQG. 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09305 758 MobiDBLite consensus disorder prediction 685 720 - -
Seca3g09305 758 PANTHER OS01G0519700 PROTEIN 59 634 - -
Seca3g09305 758 Pfam SWIM zinc finger 572 600 IPR007527 GO:0008270
Seca3g09305 758 Pfam FAR1 DNA-binding domain 76 167 IPR004330 -
Seca3g09305 758 ProSiteProfiles Zinc finger SWIM-type profile. 564 600 IPR007527 GO:0008270
Seca3g09305 758 SMART 26again6 575 602 IPR006564 GO:0008270
Seca3g09305 758 SUPERFAMILY Retrovirus zinc finger-like domains 703 743 IPR036875 GO:0003676|GO:0008270
Seca3g09305 758 Pfam MULE transposase domain 287 381 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09305 Seca-Chr3 232845280 232848778 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g09305 MULE 1.3e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09305 - - tpra:123913749 699.508