Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09302 ATGGTGATGATGCTAGAATTTGCCAAGTGGACACCATTTGTTCTAGCTTTTCTTCTATATGCGGGTAAGGAATCATTTGCCTCATCATTCACTCCCATTGATAATTACTTAGTAGCTTGTGGTTCATCCAACAGCATCAACTTTAAGGGTCGAACTTTCATTCCTGACTCTGAACATCCCAACCTTCAAATAACAGCCAACACATCTATGACCATTACCTCTAAACTCACTGTCCCTTCTCCACTCTATCAATCAGCTAGACTCTTCTCAGGAAATGCATCATATCTATTCAAAATTCAACAACATGGGAGGCATTGGATCCGCCTCTATTTTCACCCTTTTCCTGATTCCAACCACAACATGAACTTTGCCTCAATAACAGTAGTCACTGATAGTTTTGTGCTTCTCAATAATTTCACTTTCAAGAACTATAGTGACTCTCACTTGTTCAAAGAGTATGCAATCAACATTACATCAGATGAGTTACCTCTCACATTCATCCCACACAGCAATTCACTTATCTTTGTTAATGCCATTGAAGTTGTCTCCATACCTGATGAGCTCTTCCCTGACCAAATAGTAGTGGCTGTAAATCCATCTAGCTTTTTTGAACAACTTCCAAAATCTGCCCTTGAAACAGTTTACCGGGTGAATGTAGGGGGTGCATTTCTAAGCAATGAGAATGACACCCTTGGAAGGATTTGGGAGAATGATGAAAACTACTTCCACTCAACCACTACTGCTCTTAACATTTCAACAAACCCTGCTGCAATAATGTTTCCCCCTGCTGTTACACCTTATACAGCACCACCATTAGTTTATGCCACAGCCAGAGCCATGGGGAATGCATCAGAAGGGTCTTATTTAAGTTGGGTCTTCACTGTAGATCCAAACTTTCAGTATTTTGTTAGGGTGCATTTCTGTGACATAATTATCAAGTCAGTGTACACTGTAGGTTTCAATCTGTTTATAAATGGAGCATTTGCTGAGAAAAGTCTTGTCCTTTCATATTCTGTGCCATATTACACAGACTTCATCTCTCACTCCTCAGCAAACACTTTGAAAGTAAGTGTTAGTTTGGGTACAAAAGCAGACATGCTAAATGCAATAATGAATGGGTTGGAGATAATGAAAATCATCAAACATTTGGATGGATTTTCCTCTATTCAGAGTTTTCATTCTAGCATACCAGGAAAAAAGAAGAAGAGTGTTAGTGTTGATCATGATCCTAATTCTTTGCAAAGAACTGAAAGAAGTGGGAAGTTGGGGGTTATAATTGGTTTTAGTGTCACTGTTTTAACGTTTCTGGTATTACTTGGGCTATCATTTTGTTACTTGAAAGCTCGCAGGTTGAAGAAGAAATCAGCAATCACTTTTGAATTTCTGAGACAATTTACTTTCCATGAAATCCAACAAGCAACCAATGATTTTGATCCTAACCTGCTTATTGGAGAAGGAGGATTTGGTAAGGTCTATAAAGGAACACTAGAAAATGGGAAAACAGTGGCTATCAAAGTAGCAAATCCTGAATCTAGACAAGGTCTCAATGAATTCCATAACGAGATAGAGTTGTTATCTGGACTTCGTCATCAGAACCTTGTCTCTCTTGTAGGTTGCTGTAGTGAAGACTCAGAACTGATTCTAGTATACAACTACATGGCAAATGGATCTCTTAGTAGTCATCTTTATGGGAAAGATTTTGTTCCTCTGTCATGGAAGCAACGCCTTGAAATATGCATTGGGGCTGCAAAGGGACTTTGTTATCTTCACATTGGAGCTATGCAAGGCGTAATTCATCGTGATGTGAAAGCAGCAAACATTCTCTTGGATGAAAATCTTGTGCCAAAAGTTGCTGATTTTGGCATATCAAAGAAAGGTCCTCTTCTTGATAAGAGCCATGTGACAACCAATGTAAAGGGTAGCTTCGGGTATGTTGATCCTGAGTATTTTAGAACCAAGTATCTCACTAAGAAATCAGATGTTTACTCGTTTGGGGTGGTGTTGATTGAAGTTATCTGTGGCAAGCCTGCTTTAGATGATGCTCGTCCAACTCAGCAAATGAATTTAGCATTGTGGGCATTAAGCTGCCATGGAAAGGGGACTTTCTATGAAATGATGGATCCATATTTGATAGGCAAAGTGAATATGGATTCTATGAAAAAGGTCTCTGAGTTGGCTTGGAAGTGCTTGGAGGAGCGTCGGGTGAACAGGCCACCAATGGGGTATGTATTGTGTGAGCTTGAAGAGGCTCTCCATCTTGAGTTGGCATCACAAGTTTTGAATCACTCTGTCACTCATGCCAATGTAGAAAATCGTTTCACAGATGATATAGAAAATGTTGCTTGA 2346 0.3951 MVMMLEFAKWTPFVLAFLLYAGKESFASSFTPIDNYLVACGSSNSINFKGRTFIPDSEHPNLQITANTSMTITSKLTVPSPLYQSARLFSGNASYLFKIQQHGRHWIRLYFHPFPDSNHNMNFASITVVTDSFVLLNNFTFKNYSDSHLFKEYAINITSDELPLTFIPHSNSLIFVNAIEVVSIPDELFPDQIVVAVNPSSFFEQLPKSALETVYRVNVGGAFLSNENDTLGRIWENDENYFHSTTTALNISTNPAAIMFPPAVTPYTAPPLVYATARAMGNASEGSYLSWVFTVDPNFQYFVRVHFCDIIIKSVYTVGFNLFINGAFAEKSLVLSYSVPYYTDFISHSSANTLKVSVSLGTKADMLNAIMNGLEIMKIIKHLDGFSSIQSFHSSIPGKKKKSVSVDHDPNSLQRTERSGKLGVIIGFSVTVLTFLVLLGLSFCYLKARRLKKKSAITFEFLRQFTFHEIQQATNDFDPNLLIGEGGFGKVYKGTLENGKTVAIKVANPESRQGLNEFHNEIELLSGLRHQNLVSLVGCCSEDSELILVYNYMANGSLSSHLYGKDFVPLSWKQRLEICIGAAKGLCYLHIGAMQGVIHRDVKAANILLDENLVPKVADFGISKKGPLLDKSHVTTNVKGSFGYVDPEYFRTKYLTKKSDVYSFGVVLIEVICGKPALDDARPTQQMNLALWALSCHGKGTFYEMMDPYLIGKVNMDSMKKVSELAWKCLEERRVNRPPMGYVLCELEEALHLELASQVLNHSVTHANVENRFTDDIENVA. 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09302 781 Pfam Malectin-like domain 39 379 IPR024788 -
Seca3g09302 781 Pfam Protein tyrosine and serine/threonine kinase 483 741 IPR001245 GO:0004672|GO:0006468
Seca3g09302 781 Gene3D Transferase(Phosphotransferase) domain 1 553 770 - -
Seca3g09302 781 SMART serkin_6 477 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09302 781 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 343 749 - -
Seca3g09302 781 Gene3D Phosphorylase Kinase; domain 1 447 552 - -
Seca3g09302 781 FunFam receptor-like protein kinase FERONIA 445 552 - -
Seca3g09302 781 Gene3D - 209 380 - -
Seca3g09302 781 Gene3D - 35 184 - -
Seca3g09302 781 FunFam Receptor-like protein kinase FERONIA 553 769 - -
Seca3g09302 781 CDD STKc_IRAK 483 744 - -
Seca3g09302 781 ProSitePatterns Serine/Threonine protein kinases active-site signature. 597 609 IPR008271 GO:0004672|GO:0006468
Seca3g09302 781 SUPERFAMILY Protein kinase-like (PK-like) 462 752 IPR011009 -
Seca3g09302 781 FunFam Receptor-like protein kinase FERONIA 210 381 - -
Seca3g09302 781 ProSitePatterns Protein kinases ATP-binding region signature. 483 505 IPR017441 GO:0005524
Seca3g09302 781 ProSiteProfiles Protein kinase domain profile. 477 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09302 781 FunFam Putative receptor-like protein kinase 35 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09302 Seca-Chr3 232802131 232804476 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09302 15 756 Receptor kinase-like Gene Family AT5G59700 43.372 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Seca3g09302 Malectin_like 3.9e-37 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09302 - - tpra:123883851 1033.09