Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09301 ATGGCTATAATGAGAGTGAATTGTGAGAGAAGGCAAAATGTAGATGTGCCATCTCATATTATTGTTGATGTGACAGAATTAAACATAGGTGGTGATTTAGAGCTGACGTGGAGGGATGGGGTTTGGATGTGGAATTGGAGTTGGAGGCGACCTCTGTTCCAATGGGAGGTTGAACAGTTAGCTTTGCTGTCAGTAGAAATTGATTCATTACCTTTGAAACCAGACAAACGGGATTCTTGGTGTTGGAAGGCAGGAGCTTTACTTGCTAATAACTTGGGAATTGGGTTTCAACTTTCCATCAGTTCTATAACAGTCGGAACAGAGATGGTGATGATGCTAGAATTTGCCAAGTGGACACCATTTGTTCTAGCTTTTCTTCTATACGTGGGTAAGGAATCATTTGCCTCATACACTCCCGTTGATAATTATTTAGTAGCTTGTGGTTCATCCAACAACATCAATTTTCAGGGCCGAACTTTCATTCCTGACTCTGAACATCCCAACCTTAAAATAATAGCCAACAAATCTATGACCATTACCTCAAAACTCTCTGTCCCTTCTCCACTCTATCAGTCAGCTAGACTCTTCTCAGGAAATGCATCATATCTCTTCAAAATTCAACAACATGGGATGCATTGGATCCGCCTCTATTTTCACCCTTTTCCTAACATGACCTTTGCCTCAATAACAGTAGTCACTGATCGTTTCCTTCTTCTCGATAGTTTCACTTTCAAGAACTATGATGGCTCTCACTTGTTCAAAGAGTATGCAATCAGTGTTACATCAAATGAGTTGTTTCTCAAATTCATCTCTCACCACAATTCACTTGTCTTTGTTAATGCTATCGAAGTTGTCTCTATGCCGGATGTGCTCTTCCCAGACAATCTAAAGTCATTCACCCCTTTCAGTGTACCTTTAGAATTCTTCCTTGAAACAGTTTACCGATTGAATGTGGGGGGTGAATCTATCAGTGCTGAAAATGACACCCTTAATAGGAGTTGGGAGAGTGATGAAACTTACTTTCACTCCACCAGCACTGCTATCAATATTTCAACAAACATTTCTGCTATAAAGCATCCTGATTTTTTACCAATTACAGCACCCCCTTTAGTTTATGCTACTGCTAAAGCCTTGGGAAGTGTTTTTGCTGAGTCTAATTTAAATTGGGTTTTCCATGTAAGTCCAGACTTTCTGTATTTTGTCCGGATGCATTTCTGTGACATAATTAGCAAATCTCCTAACTCTTTGGTTCTGAATCTATTTATAAATGGAAGGATTACTCTTGGAAATTTTGACCTGTCATCATTGTCTGGTGACCTTGCTGAGCCTTATTTCAAGGACTTTGTGTTCTACTCTTCAGGGGAAACTATGAGGGTAAGTGTTGGCCCAGCTTTAATGTCTAATGCAACCATGAATGGGTTGGAGATACTGAAGATAAGCAATGAACATAGTGGTTTGAATGGCTTTTCTGAAAGAGGATTTGGTAAGGTCTATAAAGGAACACTAGAAAATGGGAAAACAGTGGCTATCAAAGTAGCAAATCCTGAATCAAGACAAGGTCTCAATGAATTCCATAACGAGATAGAGTTGTTATCTTGGCTTCGTCATCAGAACCTTGTCTCTCTTGTAGGTTGCTGTAGTGAAGACTCAGAACTGATTCTAGTATACAACTACATGGCAAATGGATCTCTTAGTAGTCATCTTTATGGGAGAGACTTTGTTCCTCTGTCATGGAAGCAACGCCTTGAAATATGCATTGGGGCTGCAAAGGGACTTTTTTACCTTCACATTGGAGCTAAACAAAGCATAATTCATCGTGATGTGAAGGCAGCAAACATTCTCTTGGATAAAAATCTTGTGCCAAAAGTTGCTGATTTTGGCATATCAAAAAAAGGACCTCTTCTTGATAAGAGCCATGTGACAACCAATGTAAAGGGTAGTTTTGGATATGTTGATCCTGAGTATTTTAGAACCAAGTATCTCACTAAGAAATCAGATGTTTACTCTTTTGGGGTGGTGCTGATTGAAGTTATCTGTGGCAAGCCTGCTTTAGATGATGGTCGTCCAACTCAGCAAATGAATTTGGCATTGTGGGCATTAAGCTGTCATGGAAAGGGGACTTTCTATGAAATGATGGATCCATATTTGATTGGAAAAGTGAACATGGATTCTCTGAAAAAGGTCTCTGAGTTGGCTTGGAAGTGCTTGGAGGAGCGTCGGGTGAATAGGCCACCAATGGGGTATGTATTGTGTGAACTTGAAGAGGCTCTCCACCTTGAGTTGGCATCACAAGTTTTGAATAATAATGGGGACTCTGTCACTCATGCTAGTGTCGAAAATGGATTCACAGATGATATTGAAAATGTTGCTTGA 2373 0.3995 MAIMRVNCERRQNVDVPSHIIVDVTELNIGGDLELTWRDGVWMWNWSWRRPLFQWEVEQLALLSVEIDSLPLKPDKRDSWCWKAGALLANNLGIGFQLSISSITVGTEMVMMLEFAKWTPFVLAFLLYVGKESFASYTPVDNYLVACGSSNNINFQGRTFIPDSEHPNLKIIANKSMTITSKLSVPSPLYQSARLFSGNASYLFKIQQHGMHWIRLYFHPFPNMTFASITVVTDRFLLLDSFTFKNYDGSHLFKEYAISVTSNELFLKFISHHNSLVFVNAIEVVSMPDVLFPDNLKSFTPFSVPLEFFLETVYRLNVGGESISAENDTLNRSWESDETYFHSTSTAINISTNISAIKHPDFLPITAPPLVYATAKALGSVFAESNLNWVFHVSPDFLYFVRMHFCDIISKSPNSLVLNLFINGRITLGNFDLSSLSGDLAEPYFKDFVFYSSGETMRVSVGPALMSNATMNGLEILKISNEHSGLNGFSERGFGKVYKGTLENGKTVAIKVANPESRQGLNEFHNEIELLSWLRHQNLVSLVGCCSEDSELILVYNYMANGSLSSHLYGRDFVPLSWKQRLEICIGAAKGLFYLHIGAKQSIIHRDVKAANILLDKNLVPKVADFGISKKGPLLDKSHVTTNVKGSFGYVDPEYFRTKYLTKKSDVYSFGVVLIEVICGKPALDDGRPTQQMNLALWALSCHGKGTFYEMMDPYLIGKVNMDSLKKVSELAWKCLEERRVNRPPMGYVLCELEEALHLELASQVLNNNGDSVTHASVENGFTDDIENVA. 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09301 790 Pfam Protein tyrosine and serine/threonine kinase 494 746 IPR001245 GO:0004672|GO:0006468
Seca3g09301 790 CDD STKc_IRAK 493 750 - -
Seca3g09301 790 SUPERFAMILY Protein kinase-like (PK-like) 485 753 IPR011009 -
Seca3g09301 790 Pfam Malectin-like domain 146 478 IPR024788 -
Seca3g09301 790 ProSitePatterns Serine/Threonine protein kinases active-site signature. 603 615 IPR008271 GO:0004672|GO:0006468
Seca3g09301 790 Gene3D Phosphorylase Kinase; domain 1 490 559 - -
Seca3g09301 790 FunFam receptor-like protein kinase FERONIA 459 558 - -
Seca3g09301 790 PANTHER OS07G0166700 PROTEIN 476 759 IPR045272 GO:0004714|GO:0006468
Seca3g09301 790 Gene3D Transferase(Phosphotransferase) domain 1 560 776 - -
Seca3g09301 790 SMART serkin_6 493 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09301 790 FunFam Receptor-like protein kinase FERONIA 559 775 - -
Seca3g09301 790 FunFam Receptor-like protein kinase FERONIA 309 481 - -
Seca3g09301 790 Gene3D - 310 481 - -
Seca3g09301 790 Gene3D - 142 287 - -
Seca3g09301 790 ProSiteProfiles Protein kinase domain profile. 483 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09301 Seca-Chr3 232788296 232793228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09301 493 762 Receptor kinase-like Gene Family AT5G59700 59.630 8.48e-106 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Seca3g09301 Malectin_like 1.4e-30 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09301 - - tpra:123883851 506.138