Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09295 ATGGAGATTCAGCCGGTTTCAGAACCGGAGATTCAGCCGGTTTCAGAACCGCTTCGAGCAGTACGCGGTATATTAGCTCGTCAAAGGCAAATGCTAGAACCCTTGTACGAGGATTTTCAGCGGATTGGTGCTGGGAAATTCGGAGATGTTTTCAGGTGCAGGGACCGATTGACTCAACAAGATGTGGCCGTCAAGATTATCACTATTCCAGAAAATGAGAAAAGAAATGGACTACCATGCAGAATCATTAGAGAAGTCTCTATTCTTAAAGAGTTGGATCATATCAATGTTGTGAGGTTGCTGGATGTGCTGGGCACTGAGGATGATGTATATCTTGTTTTCGAGTATCTTGACCTTGATCTCCATAAATTCGTGACCAATACAATTCTATACAGTTCACCTACCGTTTCCCTCTTGTCCTTGCAGAATTTTCTACATCAAATTCTTTCTGGAGTAGCATACTGCCATTCTCAAAAAATTCTTCACAGAGATTTGAAACCTCAGAATATTCTGATTCATTTCCGCACCCATGTACTGAAGATAGCAGACTTTGGTGTGGCCAGAACATTTGAAGTTCCTCTTTCATCGTACTCTAGTGATGTGGGTTCTCCTTGTTATAGGGCACCTGAAATTTTGTTTGGCTGCACCGATTACTCAACTCCAATTGATATGTGGTCTGTGGGTTGTATATTTGTTGAGTTGCTTAGTGGCAAGCCTCTGTTCGTTGGTCAAAGTGAATGGGATATATTGCATGGGATATTTAGCGTGCTTGGTACTCCAACAGAAGAAACCTGGCCTGGACTGTCTTCTGTATGCAACTTCATGGAAGCACTCAGCCCCCCAATGGAGCCAAAGGACCTAATACAAGTGGTACATAATCTCAACAAAGTTAAAGGTGTTCCTCTCGACCCAATTGGTGCTGATCTTCTTTCGAGATTGCTTTGCGTATGTCCAGCGTATCGAATTTCAGCTGAGGAAGCTGTTGTCCACCCATATTTGGATGGTATATGA 1011 0.4303 MEIQPVSEPEIQPVSEPLRAVRGILARQRQMLEPLYEDFQRIGAGKFGDVFRCRDRLTQQDVAVKIITIPENEKRNGLPCRIIREVSILKELDHINVVRLLDVLGTEDDVYLVFEYLDLDLHKFVTNTILYSSPTVSLLSLQNFLHQILSGVAYCHSQKILHRDLKPQNILIHFRTHVLKIADFGVARTFEVPLSSYSSDVGSPCYRAPEILFGCTDYSTPIDMWSVGCIFVELLSGKPLFVGQSEWDILHGIFSVLGTPTEETWPGLSSVCNFMEALSPPMEPKDLIQVVHNLNKVKGVPLDPIGADLLSRLLCVCPAYRISAEEAVVHPYLDGI. 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09295 336 PANTHER CELL DIVISION PROTEIN KINASE 36 333 - -
Seca3g09295 336 ProSiteProfiles Protein kinase domain profile. 36 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09295 336 SUPERFAMILY Protein kinase-like (PK-like) 33 335 IPR011009 -
Seca3g09295 336 ProSitePatterns Protein kinases ATP-binding region signature. 42 65 IPR017441 GO:0005524
Seca3g09295 336 Gene3D Phosphorylase Kinase; domain 1 27 118 - -
Seca3g09295 336 Pfam Protein kinase domain 36 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09295 336 Gene3D Transferase(Phosphotransferase) domain 1 130 336 - -
Seca3g09295 336 FunFam Mitogen-activated protein kinase 117 336 - -
Seca3g09295 336 SMART serkin_6 36 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09295 336 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Seca3g09295 336 CDD STKc_CDK_like 36 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09295 Seca-Chr3 232727621 232734828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09295 36 333 Core Cell Cycle Gene Families AT3G48750 47.651 1.20e-95 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Seca3g09295 Pkinase 8.3e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09295 K02206 - gmx:100804719 299.671