Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09284 ATGATGCTATCAGCTTCGCCATGCTCGCTTACGAGAAGCTCGCTGGAAGAGATGCTTGATTCGCTTCGCCGGAAGGATGAGGAGGAAGAGAAGAAGAAAGACCTGCCGCCGGCGTTGCCGGCACGGCCGGCTTCACGGGCCCGGCTTCCTCCAGCACGGCGGTCGCTGCCGAATAACTTCAAGGTCGGTGACAGCAACGGTGGCGCAGTGGAGAATGGATTTGGTTGCAATGGAGAGAGTAAGAGGAAGGAAACAGGTTTTGGACACATGAGAAGAGGAAGCAGTTTTGGGAGCAAGAGGATGAAGAAGGATGTGGAGTGCCCTTACGTGGCAGCATTTTCAGCATCCACTGCTTCTGTGGCTTCATCAGGGATGGTTTTGGAATTGGATGGTGACAGCGTTTCTTATTTCATGAAAACGAAGCTTCGTGTTTGGTGTAGGCAACCAAGAGGACAATGGGAACTAGGATCAGTACAGTCAACTTCAGGAGAGGAAGCATATGTTTCACTCTCAAATGGAAATGTTGTAAAAGTGGCCAGATCAGAGCTTGTACCAGCCAATCCTGATATTTTAGAGGGCGTGGATGATCTTATTAAAATTGGTTATTTGAATGAGCCATCGGTTCTTCACAATCTTAAGCTAAGATATTCTCAGGAGATGATTTATAGTAAAGCAGGGCCCATTTTGATTGCATTCAATCCTTTCAAAAGTCTCCAGATTTATGGAAATGATCATGTCTCCACTTATAGGCAGAGATTTATTGATAGTCCTCATGTTTATGCTATGGTAGATGCAGCTTATAACAAGATGATAAGAGATGATGTGAATCAGTCCATTATCATAAGCGGTGAGAGTGGATCTGGGAAGACAGAGACAGCTAAAATTGCTATGCAATACTTAGCTTCTCTTGGTGATGGCAGTTGTGGGATAGAAAATGAAATTCTTCAGACAAATTGTATACTTGAAGCTTTTGGGAATGCAAAATCATCTATAAATGACAACTCTAGCAGATTTGGAAAGTTGATTGAAATTCATTTCAGCACCATGGGTAAAATATGTGGGGCTAAAATTCAAACATATCTGTTGGAAAAGTCAAGAGTTGTTCAACTGGCCAATGGTGAGAGGTCGTATCACATATTTTATCAACTTTGTGCTGGATCTTCATCTGGTCTTAAAGAGAGCCTGAATCTTAGAGCAGCCAGTGAATATAAATATCTAAATCAGAGTGACTGCATGACGATTGATGGTGTTGATGATGCTAAAAAGTTTCATCAGCTGACGGTATATTTCTTGCCTGTTTGTTTGGTTTACAGTAAACTTCTTAACTTTGTTTATGGCCTCCTAAGATCTATGTCATTTTCCCCCTTTGGCATCTGCAATTTTCCCCAGAAAGCACTGGATACTGTTCGAATTTGTAATGAGGATCGAGAGCTGATCTTTAAGGTGCTTGCTGCAATACTATGGCTTGGAAATATATCATTCCAAGTTACTGACAGTGAAAATCATATTGAGGTTGTGGATGATGAAGCTGTAACCAATGCTGCCCTGCTGATGGGCTGCAGTTCGCGGGAATTAATGGAAGCATTATCTAGCCATAAGATCCAATCTGACAAGGATACTATTGCCAAAAGTTTGACATTGCGGCAGGCAATTGATACAAGAGATGCACTTGCAAAATTTATGTACGCAAGCTTGTTTGACTGGCTTGTAGAACAAGTTAACAAATCACTTGTGGTGGATAAAAAATGTACTGGGAAATCCATAAGTATCCTTGATATTTATGGGTTTCAGTCATTACAGAAAAATGGCTTTGAACAGTTTTGTATAAATTATGCCAATGAGAGGCTTCAACAACATTTTCATCGGCATCTGTTTAAATTGGAGCAGGAGGACTATGAATCGGATGGCATCGATTGGACTAAAGTAGATTTTGTGGACAATCAAGAGTGCTTGGATCTATTTGAGAAGAAACCACTGGGTATATTCTCTTTGTTGGACGAGGAATCAGATTTACCCAAGGCTTCTGATTTAACATTTGCTAACAAACTTAAGAAACACTTGGACGCTAATCCTTGCTTCAAAGGGGAAAGAGGCAGAGCTTTTGGTGTTCGTCACTATGCAGGGGAGGTTTTGTATGATACAAATGGCTTTCTAGAAAAGAACAGAGATACATTGTCTTCTGATTCCATTCAACTCCTGTCGTCATGTGATTGTGAACTGCTGCAATTGTTCTCCAAAATGTTCAACCAGTCTCAGAAGCAACCAAATTCCCCTTTCCACATTGATGCACTGGATTCACAGAACCAGGGTGTTGGAACAAAATTCAAGGGTCAAGTGTTCAAGTTGATGCATCAATTGGAGAGCGCCAATCCTCACTTTATTTGCTGTATAAGGCCAAATACCAAGCAGCTTCCTGGCATTTATGACGACGACCTTGTCCTACAACAGCTCAGGTGTTGTAGAGTTCTAGAAGTTGTCAGAATCTCAAGGGCTGGATATCCTACTCGAATGACTCATCAAGAGTTTTCCAGAAGGTATGCGTTTTTGCTCTCTGAGGCCAACATATCTAAGGACCCATTGAGCATCTCAGTTGCTGTTTTGCAAAAATTTAATATCCCTTCTGAAATGTATCAAGTTGGCTACACCAAACTGTATCTTCGAGCAGGGCAGATTAATGCGCTGGAGGATAAGAGAATGCAGGTTTTGCAGGGAATAATTGGGATTCAAAAATGCTTCCGTGGTCATCAAGCTCGCAGTTATTTCCATGAACTTAAGAATGGAGTTGCAACATTACAATCATTTATTCGTGGAGAAATTACGAGAAGGAAATGTGGTGTTATGATGAAGTCTTCTATAACTATTTATTCTAAAAAACTTGAGGAGATCCATGCAATCATACTACTACAATCTGTAATTCGTGGGTGGCTGGTTCGAAGGGATTCTAGTCACATGAATAAGTTGAGGAAAGATCATGAGAATGCAAAACCTAGACGGAAGTCTCGTGTAAAGTTGCCGGAATTAAAGGATTTGTCCAAAGAGCTGGTTCAGAATCTGCCTTCAGCTTTAGCAGAACTCCAAAAGCGGGTTTACAAGGCTGAAGTAATTGTAGAGCAGAAGGAAGAGGAAAATACTGAATTGAGGGAACAACTAAAACAATCTGAGAAAAAGAGGGATGAATACGAAGCAAAGATGAAATCAATGGAGGAGGCATGGCAAAAGCAGATGGCATCTTTGCAAATGAGTCTTGTTGCTGCTAGAAAGAGCCTTGCTTCTGATAATGCCACTGTTCAACCTGTAAGACATGATCTTGTGTCACCTCGTGGCTATGAATCTGAAGATATGACATCCATGGGATCTCGAACACCTGGTGGAAGCACACCTATAAAGTTCTCTGGTAGTCTTTCTGTCTCTGATATAGGGAGACATGCTAATGGTACATTGACCACAGTCAGTGATTTAATGAAGGAATTTGAGCAGCGAAGACAGATCTTCGATGGTGAAGTGAGAGCTCTGAATGAGGTTAAACCAGGGCAGTCTGCTAACACAAATTCCATGGAAGAACTTCGGAAACTTAAACAGAGATTTGAGGGATGGAAGAAACAATACAAAGTTAGACTACGTGAGACAAAATCAAAGCTTCATAAATCAGGGAATTCAGAAACAGATAAAAGTCGGTGGACATGGTGGGGGAAACTAGGTTCAAGAGCATAA 3711 0.4139 MMLSASPCSLTRSSLEEMLDSLRRKDEEEEKKKDLPPALPARPASRARLPPARRSLPNNFKVGDSNGGAVENGFGCNGESKRKETGFGHMRRGSSFGSKRMKKDVECPYVAAFSASTASVASSGMVLELDGDSVSYFMKTKLRVWCRQPRGQWELGSVQSTSGEEAYVSLSNGNVVKVARSELVPANPDILEGVDDLIKIGYLNEPSVLHNLKLRYSQEMIYSKAGPILIAFNPFKSLQIYGNDHVSTYRQRFIDSPHVYAMVDAAYNKMIRDDVNQSIIISGESGSGKTETAKIAMQYLASLGDGSCGIENEILQTNCILEAFGNAKSSINDNSSRFGKLIEIHFSTMGKICGAKIQTYLLEKSRVVQLANGERSYHIFYQLCAGSSSGLKESLNLRAASEYKYLNQSDCMTIDGVDDAKKFHQLTVYFLPVCLVYSKLLNFVYGLLRSMSFSPFGICNFPQKALDTVRICNEDRELIFKVLAAILWLGNISFQVTDSENHIEVVDDEAVTNAALLMGCSSRELMEALSSHKIQSDKDTIAKSLTLRQAIDTRDALAKFMYASLFDWLVEQVNKSLVVDKKCTGKSISILDIYGFQSLQKNGFEQFCINYANERLQQHFHRHLFKLEQEDYESDGIDWTKVDFVDNQECLDLFEKKPLGIFSLLDEESDLPKASDLTFANKLKKHLDANPCFKGERGRAFGVRHYAGEVLYDTNGFLEKNRDTLSSDSIQLLSSCDCELLQLFSKMFNQSQKQPNSPFHIDALDSQNQGVGTKFKGQVFKLMHQLESANPHFICCIRPNTKQLPGIYDDDLVLQQLRCCRVLEVVRISRAGYPTRMTHQEFSRRYAFLLSEANISKDPLSISVAVLQKFNIPSEMYQVGYTKLYLRAGQINALEDKRMQVLQGIIGIQKCFRGHQARSYFHELKNGVATLQSFIRGEITRRKCGVMMKSSITIYSKKLEEIHAIILLQSVIRGWLVRRDSSHMNKLRKDHENAKPRRKSRVKLPELKDLSKELVQNLPSALAELQKRVYKAEVIVEQKEEENTELREQLKQSEKKRDEYEAKMKSMEEAWQKQMASLQMSLVAARKSLASDNATVQPVRHDLVSPRGYESEDMTSMGSRTPGGSTPIKFSGSLSVSDIGRHANGTLTTVSDLMKEFEQRRQIFDGEVRALNEVKPGQSANTNSMEELRKLKQRFEGWKKQYKVRLRETKSKLHKSGNSETDKSRWTWWGKLGSRA. 1237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09284 1236 Gene3D Kinesin motor domain 158 452 IPR036961 -
Seca3g09284 1236 ProSiteProfiles IQ motif profile. 903 930 IPR000048 GO:0005515
Seca3g09284 1236 PANTHER MYOSIN 185 1222 - -
Seca3g09284 1236 FunFam Unconventional myosin-XIX 599 789 - -
Seca3g09284 1236 MobiDBLite consensus disorder prediction 1 98 - -
Seca3g09284 1236 SMART iq_5 900 922 IPR000048 GO:0005515
Seca3g09284 1236 SMART iq_5 923 945 IPR000048 GO:0005515
Seca3g09284 1236 SMART iq_5 960 982 IPR000048 GO:0005515
Seca3g09284 1236 Gene3D Myosin VI head, motor domain, U50 subdomain 472 767 - -
Seca3g09284 1236 Gene3D - 597 789 - -
Seca3g09284 1236 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 139 188 IPR004009 GO:0003774|GO:0005524|GO:0016459
Seca3g09284 1236 ProSiteProfiles IQ motif profile. 961 990 IPR000048 GO:0005515
Seca3g09284 1236 Pfam Myosin head (motor domain) 194 427 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca3g09284 1236 Pfam Myosin head (motor domain) 463 887 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca3g09284 1236 Coils Coil 12 32 - -
Seca3g09284 1236 Coils Coil 1181 1201 - -
Seca3g09284 1236 MobiDBLite consensus disorder prediction 17 37 - -
Seca3g09284 1236 Pfam IQ calmodulin-binding motif 963 979 IPR000048 GO:0005515
Seca3g09284 1236 Pfam IQ calmodulin-binding motif 905 922 IPR000048 GO:0005515
Seca3g09284 1236 CDD MYSc_Myo8 206 887 IPR036022 -
Seca3g09284 1236 Gene3D Kinesin motor domain 580 828 IPR036961 -
Seca3g09284 1236 SMART MYSc_2a 186 900 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca3g09284 1236 MobiDBLite consensus disorder prediction 1 16 - -
Seca3g09284 1236 FunFam Myosin heavy chain 375 428 - -
Seca3g09284 1236 ProSiteProfiles Myosin motor domain profile. 192 899 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca3g09284 1236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 983 IPR027417 -
Seca3g09284 1236 Coils Coil 1022 1070 - -
Seca3g09284 1236 Gene3D - 904 951 - -
Seca3g09284 1236 ProSiteProfiles IQ motif profile. 924 953 IPR000048 GO:0005515
Seca3g09284 1236 PRINTS Myosin heavy chain signature 587 615 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca3g09284 1236 PRINTS Myosin heavy chain signature 276 301 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca3g09284 1236 PRINTS Myosin heavy chain signature 319 346 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca3g09284 1236 PRINTS Myosin heavy chain signature 222 241 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca3g09284 1236 PRINTS Myosin heavy chain signature 640 668 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca3g09284 1236 Gene3D - 832 900 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09284 Seca-Chr3 232544148 232555873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09284 1 1233 Myosins gene family AT5G54280 58.615 0.0 1459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09284 K10357 - gmx:100802074 1725.68