Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09283 ATGGCAGCAACATTGATGGCAGCTACAGCAAGCACTGGCACAGTTCTTAAATCAACTCCTTTCCTTGGCCAAACTAGAGGAACCAACACCAACCCTCTTAGAGATGTTGTCTCTCTTGGAGCTGGGAAATACACCATGGGAAATGAATTGTGGTATGGACCAGATAGAGTGAAATACTTAGGACCCTTTTCAGCTCAGACCCCTTCATACTTGACTGGAGAATTCCCAGGTGACTATGGATGGGACACTGCTGGGTTGTCTGCTGACCCTGAAGCATTTGCTAGGAACAGGGCTCTTGAGAAGGTGATCCATGGACGTTGGGCTATGCTTGGAGCACTAGGCTGCATCACCCCTGAAGTGCTTGAGAAATGGGTTAGAGTGGACTTCAAAGAACCAGTTTGGTTCAAAGCTGGAGCTCAGATATTCTCAGAAGGTGGCCTTGACTACTTGGGGAACCCCAACCTTGTTCATGCACAAAGCATCCTAGCAGTGCTAGGCTTCCAAGTTGTTCTGATGGGTCTTGTTGAAGGATTCCGTATCAATGGTCTTCCTGGTGTGGGAGAGGGTAACAATCTGTACCCTGGTGGTCAGTACTTTGACCCTCTTGGTCTTGCTGATGACCCTGTCACTTTTGCTGAGCTCAAGGTTAAGGAGATCAAGAATGGTAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTTGTCCAAGCCATTGTGACTGGAAAAGGACCACTTGAGAATCTTTTGGATCACCTTGACAACCCTGTGGCTAACAATGCTTGGGTCTATGCCACTAAGTTTGTGCCCGGTTCTTAA 813 0.476 MAATLMAATASTGTVLKSTPFLGQTRGTNTNPLRDVVSLGAGKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEKVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPGS. 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09283 270 Gene3D Chlorophyll a/b binding protein domain 58 263 - -
Seca3g09283 270 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 13 269 IPR001344 GO:0009765|GO:0016020
Seca3g09283 270 FunFam Chlorophyll a-b binding protein, chloroplastic 58 263 - -
Seca3g09283 270 SUPERFAMILY Chlorophyll a-b binding protein 50 267 - -
Seca3g09283 270 Pfam Chlorophyll A-B binding protein 68 236 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09283 Seca-Chr3 232542374 232543786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09283 14 269 Chloroplast and Mitochondria Gene Families AT2G05070 68.302 8.69e-122 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09283 K08914 - cave:132175650 527.709