Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09281 ATGTTAAAAGAAAGGAGAGTATATCCATTCGTCCATTTCATTATTATCTACTCTTCATTGGGGCTAGTCCTGCCTCTATCAATTATTTGTGTTTCTATTTCAATTTTCAATTCCTCACAACACTCAAAACCTGTGCTGTGCCTATACTCACAAATTAACCACACAAAAATTAAATACAAAAATCCCTCCCATCTCAAGTCTCAACTCAACACTCTGTTCTGTTCTCTCTCCACCACCATGGCCACAGAGCGAGAAATCTCACGTGCTTCGCGCATGCACGACTACACCACCACGGACGACGAAGACGACGTCGTTGAGGACAGCGAACTGGAGCACGACGAAGAACAAAAAGAAAAACAACAACGCGGGGGAGAATTAGAGAACGATGCTTCCTGCACAAGGAGGTCCTATGCGGGTCGGGTTGTGGATCCGAGAGAGAAATGGGTTCAGGAATGGAACAGAGTGTTCCTGTTAGTGTGCGCTGCGGGATTATTCGTGGATCCTCTCTTCTTCTACGCGCTCTCCATCAGCGACTCTTGCATGTGCCTCTTCGTTGACGGTTGGTTCGCCGTTACCGTAACGGTGCTCCGTTGCATGACGGACGCCTTGCACCTCTGGAACATTTTGTTGCGCTTCAAAATGGCTAAACGCTCATTCGGTTTCGGCGGTGGTACTGGCGCCGCCGCAGATGCCGGTAGCTCCGTCGCTCTTCGCTATCTCAAGTCACGGAGAGGATTCTTCTTTGATTTCTTTGTCATTCTTCCTATTCCTCAGATTGTGCTTTGGGTGGCAGTCCCATCCCTGTTGGAGAAAGGTTCAGTTACGGTGGTTATGACAGTAATGTTAACTATGTTTCTGTTCCAATACCTTCCCAAAATTTACCATTCAGTTTGCCATTTGAGACGCACACAAAACCTCTCTGGCTACATTTTTGGGACTGTTTGGTGGGGTATCGCCCTTAACATGATCGCCTATTTTGTCGCTTCCCATGCAGCAGGGGCATGTTGGTACTTGCTGGGGATCCAAAGGGCAGGGAAGTGTCTGAAAGAGGAGTGTGTAAAAACAAGTGGTTGTGGCATTAAAATGCTGTCTTGCCATAAGCCTATGTATTATGGAAGCAGTAGCTTAATGGATAGGGAGAGAGGAAGATTGGTGTGGGCAGAGAACAGGGAAGCAAGGTCTACATGCTTAAATGGTCCCGATAGTTACAACTATGGAGCTTATAAATGGACTGTTCAACTTGTCACTAATGAAAATCGATTGGAAAAGATACTTTTTCCTATCTTCTGGGGCCTAATGACTCTCAGCACATTCGGGAACCTAGAGAGCACGACGGAATGGCTAGAAGTAGTTTTCAACATCTTTGTGTTGACCAGTGGCCTTCTTCTTGTCACTATGTTGATTGGAAACATCAAGGTGTTTTTGCATGCAACAACATCAAAGAAACAAGCGATGCAATTGAAGATGAGAAACATTGACTGGTGGATGAGGAAAAGGAGATTGCCACAAGGGTTTAGGCAGCGCGTGCGTAACTATGAAAGACAACGGTGGGCTGCTATGCGTGGTGTTGATGAATGTGAGATGACAAGAAATCTCCCTGAGGGTCTAAGAAGAGATATCAAATACCATCTTTGTTTAGATTTGGTCAGACAGGTTCCACTGTTTCAACATATGGATGATCTGGTTCTAGAGAACATCTGTGACCGTGTGAAGTCTCTGATATTCACAAAGGGAGAAACAGTACGCTCTAAATTCCTCTAA 1761 0.4549 MLKERRVYPFVHFIIIYSSLGLVLPLSIICVSISIFNSSQHSKPVLCLYSQINHTKIKYKNPSHLKSQLNTLFCSLSTTMATEREISRASRMHDYTTTDDEDDVVEDSELEHDEEQKEKQQRGGELENDASCTRRSYAGRVVDPREKWVQEWNRVFLLVCAAGLFVDPLFFYALSISDSCMCLFVDGWFAVTVTVLRCMTDALHLWNILLRFKMAKRSFGFGGGTGAAADAGSSVALRYLKSRRGFFFDFFVILPIPQIVLWVAVPSLLEKGSVTVVMTVMLTMFLFQYLPKIYHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAGKCLKEECVKTSGCGIKMLSCHKPMYYGSSSLMDRERGRLVWAENREARSTCLNGPDSYNYGAYKWTVQLVTNENRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIFVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIDWWMRKRRLPQGFRQRVRNYERQRWAAMRGVDECEMTRNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETVRSKFL. 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09281 586 SUPERFAMILY Voltage-gated potassium channels 144 475 - -
Seca3g09281 586 MobiDBLite consensus disorder prediction 90 129 - -
Seca3g09281 586 SUPERFAMILY cAMP-binding domain-like 480 581 IPR018490 -
Seca3g09281 586 Gene3D Helix hairpin bin 479 545 - -
Seca3g09281 586 MobiDBLite consensus disorder prediction 112 129 - -
Seca3g09281 586 Pfam Ion transport protein 152 471 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca3g09281 586 FunFam Cyclic nucleotide-gated ion channel 1 481 545 - -
Seca3g09281 586 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 118 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09281 Seca-Chr3 232495870 232501544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09281 123 584 Ion Channels AT5G54250 72.222 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09281 K05391 - gmx:100796761 794.653