Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09280 ATGATGATGCAGATAGCGAGAGAAGGAGACCCAGTTCAAAGGATGCTATTTGTAGTGAGGGGTCACCTTCAGAGCAGCCAGGTGCTGAGGGATGGGGTGAAAAGTTGCTGCATGTTAGGACCTGGAAACTTCAGTGGGGATGAGCTTCTTTCATGGTGTTTGAGGAGGCCCTTCATAGAACGGCTTCCACTATCTTCATCCACACTCATCACATTGGAAACTACAGAGGCATTTGGTCTTGAAGCAGAGGATGTGAAGTATGTGACACAACATTTCAGGTACACGTTTGTGAAGGAAAAGGTGAAGAGAAGTGCCAGGTATTACTCACCAGGCTGGAGAACTTGGGCTGCTGTTGCCATTCAATTGGCTTGGAGAAGGTACAGGCATCGCTTGACTTTGACCTCATTGTCCTTTATAAGGCCTAGGAGACCCGTGTCACGATGTTCTTCCTTGGGAGAGGACAGGCTTCGCCTCTACACCGCTTTGTTAACTTCACCAAAGCCTAATCAGGATGATTTTGACTTTTGA 528 0.4754 MMMQIAREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPLSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYRHRLTLTSLSFIRPRRPVSRCSSLGEDRLRLYTALLTSPKPNQDDFDF. 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09280 175 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 4 140 - -
Seca3g09280 175 SUPERFAMILY cAMP-binding domain-like 5 92 IPR018490 -
Seca3g09280 175 Gene3D Jelly Rolls 2 94 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09280 Seca-Chr3 232495048 232495575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09280 5 174 Ion Channels AT5G54250 90.000 3.90e-110 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09280 K05391 - cpap:110820661 334.724