Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09272 ATGATGGAAGGGGTTTCAAGGGAAGCCCAGATGTCGATTGCAGCTTCGTCCATGTTTCCTGGGTTCAGGTTTTGCCCCACCGACGAAGAGTTGATTTCATATTACCTCAGGAAGAAATTGGATGGCCATGAAGAGAGTGTTCAAGTCATTTCTGAGGTTGAGCTTTGTAAATATGAGCCTTGGGATTTACCAGCGAAATCATTCATTCAATCAGATAACGAGTGGTTCTTCTTCTCTCCCCGTGGAAGAAAGTATCCAAATGGTTCACAAAGTAAAAGAGCAACAGAATGTGGCTATTGGAAGGCCACTGGCAAAGAACGCAATGTAAAATCAGGTTCTAACATTATAGGTACAAAACGAACTTTGGTATTCCACTTAGGACGTGCACCTAAAGGGGAAAGGACTGAATGGATTATGCATGAGTATTGCATCAATGACAAGTCTCAGGATTCTTTGGTGGTTTGTCGCCTTAAGAGGAACACAGAGTTCCGTTTACACGATGCTTCAAATAGAGCTTCTTCAAGTCAAATGCACCCTGTGAATTCACATGAAAGTGATTGTGCTATCTCAGGAGGTGGTGGCATAGATCAAAGAGGTGGCTGTGAGCAAGACAAAGAGATTGGATGTTGCTCCAAAAGGAGCAGTAGCAGTTATGGTTCTCCTTCAATGGAGCAAATTGACTCTGTCTCTGAATCGAATCAGCGACCAGCTAATGATGCTGCTCAAACAGAATCTTCTGATCACTTAAAGGAGGTGGATGAAGAGGATTGTTATGCTGAGATACTAAAGGATGATATCATCAAATTAGATGAATCATCAATCCAACAAGAGGCTCACACAAGACAACAGGAACCTACACAGGTGCATCCCTGCCAAGGTACAGCACAACGGAGAATAAGATTAAGGGTTGGGAATTCAAAGCATTCTACTATACAAGTTAATTACCCAAGCACAATGCACTCATCAAAGAGTACTAGTACTAGTACTACTACTACTACCTTCCTTGCCAGAATAACCAACCCTTTGGTGTTTGAGTGGAAGCAACAGCTTGTGGTCGATGTTGACTCTAATCCCAGCTTATCGCAAAAACAGCATCATATAACCAAGGCTGAAGAAACTGTAAAGGAGAAGATTATTTTAGTGCAAGAGAAGAATATTCGAAGACTGAATGAGCTTGTGCGGCATCTCCAGGAACAACTGCAGCAGTGTAGAGGAAGCAATGGATCTATAAATGGCACTCTAAGCCCTCTAGCTGAGCGGATTCTTGAGCTTGAGCGACAGCAAATTTTAGAGGATTAA 1299 0.4249 MMEGVSREAQMSIAASSMFPGFRFCPTDEELISYYLRKKLDGHEESVQVISEVELCKYEPWDLPAKSFIQSDNEWFFFSPRGRKYPNGSQSKRATECGYWKATGKERNVKSGSNIIGTKRTLVFHLGRAPKGERTEWIMHEYCINDKSQDSLVVCRLKRNTEFRLHDASNRASSSQMHPVNSHESDCAISGGGGIDQRGGCEQDKEIGCCSKRSSSSYGSPSMEQIDSVSESNQRPANDAAQTESSDHLKEVDEEDCYAEILKDDIIKLDESSIQQEAHTRQQEPTQVHPCQGTAQRRIRLRVGNSKHSTIQVNYPSTMHSSKSTSTSTTTTTFLARITNPLVFEWKQQLVVDVDSNPSLSQKQHHITKAEETVKEKIILVQEKNIRRLNELVRHLQEQLQQCRGSNGSINGTLSPLAERILELERQQILED. 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09272 432 Gene3D NAC domain 27 175 IPR036093 GO:0003677|GO:0006355
Seca3g09272 432 MobiDBLite consensus disorder prediction 168 183 - -
Seca3g09272 432 Coils Coil 379 406 - -
Seca3g09272 432 ProSiteProfiles NAC domain profile. 18 160 IPR003441 GO:0003677|GO:0006355
Seca3g09272 432 MobiDBLite consensus disorder prediction 211 253 - -
Seca3g09272 432 MobiDBLite consensus disorder prediction 211 243 - -
Seca3g09272 432 SUPERFAMILY NAC domain 10 159 IPR036093 GO:0003677|GO:0006355
Seca3g09272 432 MobiDBLite consensus disorder prediction 168 191 - -
Seca3g09272 432 Pfam No apical meristem (NAM) protein 20 143 IPR003441 GO:0003677|GO:0006355
Seca3g09272 432 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09272 Seca-Chr3 232365551 232375456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09272 5 287 NAC Transcription Factor Family AT2G27300 53.357 4.69e-100 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca3g09272 NAM 1.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09272 - - tpra:123896537 630.943