Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09258 ATGCAAAATGGAAGTTTAGATTCTCATCTTTTTGGTGGAGAAAGTCTCTTGTCATGGCAGGTGAGGTACAAGATAGCTATGGGCTTGGCCTCAACATTACATTATTTGCAGGAAGAGTGGGGACAATGTGTGCTTCATAGGGACATCAAATCAAGTAACATAATGTTGGATGGAACAGACTCAGTAAAATGA 192 0.401 MQNGSLDSHLFGGESLLSWQVRYKIAMGLASTLHYLQEEWGQCVLHRDIKSSNIMLDGTDSVK. 64
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09258 63 SUPERFAMILY Protein kinase-like (PK-like) 1 63 IPR011009 -
Seca3g09258 63 PANTHER - 1 58 - -
Seca3g09258 63 Pfam Protein tyrosine and serine/threonine kinase 1 63 IPR001245 GO:0004672|GO:0006468
Seca3g09258 63 Gene3D Transferase(Phosphotransferase) domain 1 1 63 - -
Seca3g09258 63 ProSitePatterns Serine/Threonine protein kinases active-site signature. 44 56 IPR008271 GO:0004672|GO:0006468
Seca3g09258 63 ProSiteProfiles Protein kinase domain profile. 1 63 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09258 Seca-Chr3 232162339 232162530 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09258 1 63 Receptor kinase-like Gene Family AT5G65600 68.750 5.51e-24 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca3g09258 PK_Tyr_Ser-Thr 5.8e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09258 - - mof:131166189 100.138