Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09257 ATGGAGGATCTCCCACCTGGTTTTCGTTTCTACCCAACAGAAGAGGAGCTAGTTGGCTTCTATCTACACAACCAGCTTGAAGGGCAACAACACCACATCAACAGAGTTATCCCAGTCATTGATATCAATGGCGTAGAGCCCTGGAACCTTCCATCACTTGCAGGGGAGCTGTGTCGTGGTGACACGGAGCAATGGTTTTTCTTTTCACCAAGACAAGAGAGAGAGGCCAGGGGAGGCAGACCCAACAGAACCACAGGTAGTGGGTATTGGAAGGCCACGGGTTCTCCTGGTCACGTTTACTCTGCTGATAACAGAGTCATTGGGATGAAGAAAACCATGGTGTTTTACAATGGAAAAGCTCCTAGTGGAAAGAAAACCAAATGGAAGATGCATGAATACAAAGCCATTCAACACACCAATAACCAATCCAACCCGGCCACTCCAAAGGTATATATAAATTACTATATAACTATCTTGAGGCACGAATTCAGCTTGTGTCGTGTTTATGTCATATCGGGAAGCTTTCGGTCATTTGATAGACGTCCATTAGAGAGGCCAAGAGTGGGATTAAGACAGCTTGATGCTGCAGCTTCAACAAGTGCTCATCAGCAGGTAGCAGCAGAGGTTGATGGATCAAGCTCCTCTGAAACTTCTCACTCTGGTGGAGGAGGAGGAGACCAATGTGATGGTGCTCAGGCTGGAGGGTCAAGTGGCACAAATTGGAATGTTGCACATAATGAGGTTGAAGGACCTCTTTGGGAATTAGAGCAACTTGATTGGCTCTAA 786 0.4656 MEDLPPGFRFYPTEEELVGFYLHNQLEGQQHHINRVIPVIDINGVEPWNLPSLAGELCRGDTEQWFFFSPRQEREARGGRPNRTTGSGYWKATGSPGHVYSADNRVIGMKKTMVFYNGKAPSGKKTKWKMHEYKAIQHTNNQSNPATPKVYINYYITILRHEFSLCRVYVISGSFRSFDRRPLERPRVGLRQLDAAASTSAHQQVAAEVDGSSSSETSHSGGGGGDQCDGAQAGGSSGTNWNVAHNEVEGPLWELEQLDWL. 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09257 261 ProSiteProfiles NAC domain profile. 4 171 IPR003441 GO:0003677|GO:0006355
Seca3g09257 261 MobiDBLite consensus disorder prediction 201 241 - -
Seca3g09257 261 Gene3D NAC domain 13 174 IPR036093 GO:0003677|GO:0006355
Seca3g09257 261 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Seca3g09257 261 SUPERFAMILY NAC domain 3 169 IPR036093 GO:0003677|GO:0006355
Seca3g09257 261 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 197 - -
Seca3g09257 261 MobiDBLite consensus disorder prediction 201 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09257 Seca-Chr3 232157695 232159329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09257 2 260 NAC Transcription Factor Family AT3G44350 52.124 1.34e-88 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca3g09257 NAM 1.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09257 - - gmx:100780264 371.703