Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09241 ATGGCTGATTCCAAGGAGAAAAACCGTAAATTTGTGGAGACCATTGAACTCCAAATTGGGCTGAAAAACTATGACCCTCAGAAGGATAAGCGTTTCAGTGGCTCTGTCAAGTTGCCCCACATCCCTCGCCCCAAGATGAAAATTTGCATGCTTGGTGATGCCCAACATGTTGAAGAGGCAGAGAAGATAGGATTGGACTGGATGGACGTTGAAGCCTTGAAGAAACTAAACAAAAATAAGAAATTAGTGAAGAAACTAGCCAAGAAATACCATGCCTTTTTAGCTTCTGAAGCAGTTATCAAGCAGATCCCTCGTCTTTTGGGTCCTGGTCTCAACAAGGCAGGCACATTTCTAATTTCTGTTATTGCATTAGCTGATTTTGATATTTTGCATGACTTTGCAGGGAAGTTCCCTACACTTGTTACTCACCAAGAATCTCTTGAGTCAAAGGTTAATGAGACTAAGGCTATGATCAAATTCCAGCTTAAGAAGGTGCTCTGCATGGGAGTAGCTGTGGGAAATGTTAGTATGGAGGAAAAGCAAATCTTCCAAAATGTACAACTGAGTGTTAACTTCCTTGTCTCCTTGTTGAAAAAGAATTGGCAAAATGTGAGTCCACTCTCAGAATAA 630 0.4111 MADSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDWMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGTFLISVIALADFDILHDFAGKFPTLVTHQESLESKVNETKAMIKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVSPLSE. 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09241 209 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 2 208 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Seca3g09241 209 SUPERFAMILY Ribosomal protein L1 6 205 IPR023674 -
Seca3g09241 209 Pfam Ribosomal protein L1p/L10e family 6 205 IPR028364 -
Seca3g09241 209 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 5 195 - -
Seca3g09241 209 FunFam Ribosomal protein L10a 1 103 - -
Seca3g09241 209 Gene3D - 1 103 - -
Seca3g09241 209 Gene3D - 140 208 - -
Seca3g09241 209 CDD Ribosomal_L1 5 204 IPR028364 -
Seca3g09241 209 FunFam Ribosomal protein 141 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09241 Seca-Chr3 231922888 231924209 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09241 4 207 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 82.353 4.70e-104 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09241 K02865 - gmx:100808580 329.717