Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09234 ATGTACCATCATCACCAACATCAAGGGAAAAACATTCATTCTTCTTCAAGAATGCCAATCCCCTCTGAGAGGCACATGTTCCTTCAAACAGGAAATGGGTCTGGTGATTCTGGACTTGTGCTCTCAACTGATGCAAAGCCTAGATTAAAATGGACACCTGATCTTCATGCCAGGTTTATAGAAGCAGTCAATCAGTTAGGTGGAGCTGACAGTGAGTATACACATCCACTTTTGGATCATCAATTCTTGAGCAACATAGAACTTGAATTCACTAATGCAAAGTACAATCTTTCTATTGCAGAGGCAACTCCAAAAACGGTAATGAAACTCATGGGGATTCCAGGGCTTACCTTATATCATCTAAAGAGTCATCTTCAGAAGTACAGATTGAGCAAGAATCTGCATGGACAAAGCAACAACGTGACACACAAAATCACAACAAATGCAGGTGCAGGAACTGGAGAGAGACTTTCTGAAACCAATGGAACTCACATGAATAAATTAAGCCTTGGACCACAGCCTAACAAAGATTTACATATAAGCGAGGCACTACAGATGCAGATTGAGGTTCAGAGAAGACTCAATGAACAACTTGAGGTACAGAGACACTTGCAGGTTCGGATAGAAGCCCAAGGAAAGTACCTTCAATCTGTGCTGGAGAAAGCACAAGAGACTCTTGGTAGACAAAATTTGGGAATAGTAGGACTTGAAGCCGCTAAAGTTCAACTTTCAGAGCTTGTGTCCAAAGTATCCTCTCAGTGCCTGAACTCAGCATTTTCAGAGCTAAAAGAACTACAAGGATTTTGCCCCCAGCAAACACAAACCACCAACCAGCCAAATGACTGCTCAATGGACAGTTGCCTCACATCCTGTGACAGATCACAGAAGGAACAAGATATTCAAAATGGGGGCATTGGCTTAAGACACTTCAATGGCCACATATTCATGGAACGAAAGGAAGCCACAGTCACAGAAGTTCCCAACCTTAGGAACTCTGAACTCAAGTGGTGTGATGAAGTGAAAAAGAACAACACTTTTCTCACCCCATTGGGTAAGAATGAAGAAAGAACTACTTATGCTGTAGAAAGCAGTCCCAACAACTTGTCTATGACCATTGGACTTGAAAGAGAAAGAGAGAATGGCATCAGCATCTACCCTCCTGAGAGAGTAATCACAGAAAATCACTCAGATGGTGAATTCCAGCACAGGAACATAACTAGGACAGAAACAATGAAACAAGTGGATGATAGGTTGCCTTCTTACTTTGCAGCAGCAAGATTGGACCTAAATACCCGTGGAGACAATGAAGCTACAACCAGTTGTAAACAACTGGACTTGAATAGATTCAGTTGGAACTGA 1359 0.4209 MYHHHQHQGKNIHSSSRMPIPSERHMFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADSEYTHPLLDHQFLSNIELEFTNAKYNLSIAEATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNVTHKITTNAGAGTGERLSETNGTHMNKLSLGPQPNKDLHISEALQMQIEVQRRLNEQLEVQRHLQVRIEAQGKYLQSVLEKAQETLGRQNLGIVGLEAAKVQLSELVSKVSSQCLNSAFSELKELQGFCPQQTQTTNQPNDCSMDSCLTSCDRSQKEQDIQNGGIGLRHFNGHIFMERKEATVTEVPNLRNSELKWCDEVKKNNTFLTPLGKNEERTTYAVESSPNNLSMTIGLERERENGISIYPPERVITENHSDGEFQHRNITRTETMKQVDDRLPSYFAAARLDLNTRGDNEATTSCKQLDLNRFSWN. 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09234 452 MobiDBLite consensus disorder prediction 144 174 - -
Seca3g09234 452 SUPERFAMILY Homeodomain-like 45 131 IPR009057 -
Seca3g09234 452 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 321 IPR044848 GO:0003700
Seca3g09234 452 MobiDBLite consensus disorder prediction 144 170 - -
Seca3g09234 452 Pfam MYB-CC type transfactor, LHEQLE motif 179 225 IPR025756 -
Seca3g09234 452 NCBIfam myb-like DNA-binding domain, SHAQKYF class 89 131 IPR006447 GO:0003677
Seca3g09234 452 Gene3D - 45 133 - -
Seca3g09234 452 Coils Coil 181 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09234 Seca-Chr3 231818185 231821426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09234 108 452 G2-like Transcription Factor Family AT3G04030 51.862 2.19e-99 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca3g09234 Myb_CC_LHEQLE 4.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09234 - - gmx:100810396 680.633