Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09233 ATGTTGGGTTTGGATTCTTTAATGAATGAGGTGTTGAGTTTGGGTGACTATGGTGGATTCAAGGGCTTGGTGGTGGTGAGCTGGATCCCCGCCACTACGAAACTCGTAGTCACTTCTTCACTCAAACACACTCACGCCACTGCCCTAAGCCTCTCCGCCATCTTCTTCTTCACCCAAACAAACTCCATCACCACCTTCCATTCACGTTGTCGTTGCCAACATCCCCTCACATCTTCGTCGCGAGTTGCCGTCACATCCCACGGAGCTTCTTTAGCGTCGTCCATCACTGCCTTTGAGCACCTTGGGTTCGCATCTTCTTTGCTCTTCAGGTCTTCCTCAGACACAACATCTGACCCTAAACTAAGCTCCGTCAAGGTGGCCTCAGAGTCAGATATTCGTATCTTGTTGATGCCTTGGATGGTATTTGTTTGGTGGAATCGTGGAAAGAAAGCTTACCCACTCACCATCTTCTGTTTTTCCCTTGACAATGCAAAGTCAAAAGTTCGAAATTTCTTAATTCTTACTCACAAGAAACAACCTGGCTACCTCGGTACAAATAGAGATGGGTGGATTACTCTGAGTAATCACATTTTTTTGACTCAGGTCGTATTTCTTATTTTGATTTGGATGTTTAATTGTAACAGCTGTATAAATCAAATTCTGAGTATGGAAGATTCTGATCAACTCGCCAAATCTGCCGAAAACCAGCAAACTGAACAAGTGTGCAGTTTCTTTAGAAAACCGATTAATAAGAAGAATATAAGGAAACGCACTATTGAAAATGAAGATGAGGAGGACGACTCAAACAATGAAAACTCTTTGTTTCATGTTCAGAAAAAGACCTTGAAGCCTGACAATAAGTTGTACTTTTCCACTGGTTCTTCAAAAAGCTCTGCATCTGCTGAACCGACTGAAGAATCTGGGAAACCAGTCTTTCAGTTTGAGTCTTCAAAAGAGATTCAAGTTGAACATGACAGCAAAGCAACGGCAACCCTAGAGACTGAGACTGAGTTTTCGAAAGATGCTCGTGCAATCCGTGAAAGGGCTCTTAGGAAAGCAGCAGAGAGTCTGAAGGGGAAAGGCAAAAATTCTGAGGATGAAAAGTTATACAAGGGAATCAACAGTTACAAAGACCACAAAGCTGGCTTTCGTAGAGAGCAAACGATTGCTAGTGAAAAAGCTGGTGGGGCTCATGGTCCTCTTAGGGCTTCGGCTCATATAAGAGTTTCAGCAAGATTTGATTATCAGCCTGACATATGTAAGGATTACAAGGAAACTGGTTACTGTGGGTACGGTGATTCGTGTAAGTTTATGCATGATCGAGGGGATTATAAGTCTGGGTGGCAGTTGGAGAAGGAATGGGAAGAAGCTGAGAAGGCAAGGAAGATGAGATTGGCTGCAGGTGAAGATGTGGATGAGGAGGACACTAATGTGACTGATGAAGATGATGATGATTCATTACCATTTGCATGTTTCATTTGTAGAAAGCCATTTGTGGACCCTGTTGTAACCAAGTGCAAGCACTACTTCTGCGAGCATTGTGCGTTGAAGCATCATGCAAAGAATAAGAAGTGTTTTGTCTGCAACCAGCCAACACTTGGCATTTTTAATGTTGCTCATGAGATACGCAAGAAGATGGCCGAGGAGTGA 1650 0.4333 MLGLDSLMNEVLSLGDYGGFKGLVVVSWIPATTKLVVTSSLKHTHATALSLSAIFFFTQTNSITTFHSRCRCQHPLTSSSRVAVTSHGASLASSITAFEHLGFASSLLFRSSSDTTSDPKLSSVKVASESDIRILLMPWMVFVWWNRGKKAYPLTIFCFSLDNAKSKVRNFLILTHKKQPGYLGTNRDGWITLSNHIFLTQVVFLILIWMFNCNSCINQILSMEDSDQLAKSAENQQTEQVCSFFRKPINKKNIRKRTIENEDEEDDSNNENSLFHVQKKTLKPDNKLYFSTGSSKSSASAEPTEESGKPVFQFESSKEIQVEHDSKATATLETETEFSKDARAIRERALRKAAESLKGKGKNSEDEKLYKGINSYKDHKAGFRREQTIASEKAGGAHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKEWEEAEKARKMRLAAGEDVDEEDTNVTDEDDDDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRKKMAEE. 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09233 549 SUPERFAMILY CCCH zinc finger 413 445 IPR036855 GO:0046872
Seca3g09233 549 SUPERFAMILY RING/U-box 490 533 - -
Seca3g09233 549 Gene3D - 412 446 - -
Seca3g09233 549 PANTHER ZINC FINGER PROTEIN 183 235 549 IPR039971 -
Seca3g09233 549 SMART c3hfinal6 414 441 IPR000571 GO:0046872
Seca3g09233 549 ProSitePatterns Zinc finger RING-type signature. 506 515 IPR017907 -
Seca3g09233 549 Pfam Zinc finger, C3HC4 type (RING finger) 490 532 - -
Seca3g09233 549 CDD RING-HC_RNF113A_B 484 537 - -
Seca3g09233 549 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 415 440 IPR000571 GO:0046872
Seca3g09233 549 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 489 548 IPR013083 -
Seca3g09233 549 ProSiteProfiles Zinc finger C3H1-type profile. 414 442 IPR000571 GO:0046872
Seca3g09233 549 FunFam RING finger protein 113A 489 548 - -
Seca3g09233 549 SMART ring_2 491 528 IPR001841 -
Seca3g09233 549 FunFam Zinc finger CCCH domain-containing protein 1 412 446 - -
Seca3g09233 549 ProSiteProfiles Zinc finger RING-type profile. 491 529 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09233 Seca-Chr3 231799022 231804001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09233 232 549 C2H2 Transcription Factor Family AT1G01350 70.405 4.21e-166 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca3g09233 zf-C3HC4_3 1.7e-08 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09233 K13127 - gmx:100787434 565.844