LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g09232	ATGGCTAGCCACAGAATAGGAGAACTTGGTTTGTCTGAGTCAGGGCCTTCAAGTCACCATGTCCCTTATGGAGTTCATCACAGGATTAATGCTCCTACATCAAGCTTAATCAATCAAGGATCTGGTTTTGATTTTGGAGAGCTGGAAGAAGCAATTGTTCTGCAAGGAATTAAGAGTAGAAATGATGAAGGCAAAGCATCTTTATTCACAGGCAGACCTGCTGCTACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAGCAAACCCCAAGAGGAGGTTCCATTTCCAAGTCAGGAGGGGAAAGCACTGATTCAGCTCTTTCAAGCAAAACTGAGAACCCCTTTGAGCCAGAATCTCCCATAAGTAAAAAGGCATCTTCTTCAGATCATCATCTGCACCTTCAACAGGAGATGGCTAATGATGCTCCTTCACAGAATCAATCAGCAGCCAAATCACCTCTGGAAAAGTCTTCACACACAAAGAAAGAAGAAAAAACGGCACAGATCCCAACAGCTTTCAGAAAATCAAAAGAACACAGAGTTTTCCTGATTCCTGAACGATTTTCTGACATGAAACATGATAGAGAGATAAAGAGAGGGAGAAAGGGAGCTGGTTCCACCTCAGATAATAAACAACTTGATGCAAAGACATTGAGACGTTTAGCTCAAAACAGAGAGGCTGCAAGGAAAAGTCGCCTCAGGAAAAAGGCTTATGTGCAACAACTAGAGTCAAGTAGATTAAAGCTTACCCAACTTGAACAAGACCTTCAAAGATCACGTTCTCAGGGAATGTTCATGGATTGGGGTGGTGTTGGAAGCAATGTAAGCTCTGGAGGTGCAATGTTTGACATGGAATATGCAAGATGGTTAGAAGAAGATAACAGGCTAATAGGGGAGCTTAGGAATGGATTGCAGGTGCCATTATCAGATAGTGATATGAGAGTGATGGTGGATGCATATCTCTCTCATTATGATGAAGTTTTTAGGCTCAAAGGAGTTGCTGCTAAATCTGATGTCTTTCACCTTATCAATGGCATGTGGACTTCCCAAGCTGAACGCTGCTTCCTCTGGATTGGTGGTTTTAGGCCCTCTGAACTTATCACGATGTTGATCCAACAATTGGAGCCACTAGCGGAGCAACAGATAATGGGGATGTATGGGCTGAGGCATTCTTCACAGCAAGCAGAGGAGGCTCTTTCTCAAGGCCTTGATCAGTTGCAGCAATCTCTTGTGGACACCATAGCTGGAGGACCCATTGTTGATGGTGTTCAACAGATGGTTGTCGCCATGGGAAAGCTCTCCAATCTTGAAGGATTTGTTCGCCAGGCTGATAATTTGAGACAACAGACTCTTCACCAATTATGTCGATTACTGACAGTTCGTCAAGCAGCAAGGTGTTTCCTTGTGATTGGAGAGTACTATGGACGTCTTCGAGCTCTTAGTTCTCTTTGGGCATCAAGACCAAGAGAGACCTTGATCATCAGCGATGATAACTCATGCCAAACAAGCACGGATATGCAAATGGTCCAACCTAATTCTCAGAATCATTTCGCGAGTTTCTGA	1566	0.4381	MASHRIGELGLSESGPSSHHVPYGVHHRINAPTSSLINQGSGFDFGELEEAIVLQGIKSRNDEGKASLFTGRPAATLEMFPSWPMRFQQTPRGGSISKSGGESTDSALSSKTENPFEPESPISKKASSSDHHLHLQQEMANDAPSQNQSAAKSPLEKSSHTKKEEKTAQIPTAFRKSKEHRVFLIPERFSDMKHDREIKRGRKGAGSTSDNKQLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQDLQRSRSQGMFMDWGGVGSNVSSGGAMFDMEYARWLEEDNRLIGELRNGLQVPLSDSDMRVMVDAYLSHYDEVFRLKGVAAKSDVFHLINGMWTSQAERCFLWIGGFRPSELITMLIQQLEPLAEQQIMGMYGLRHSSQQAEEALSQGLDQLQQSLVDTIAGGPIVDGVQQMVVAMGKLSNLEGFVRQADNLRQQTLHQLCRLLTVRQAARCFLVIGEYYGRLRALSSLWASRPRETLIISDDNSCQTSTDMQMVQPNSQNHFASF.	522

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g09232	521	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	220	235	IPR004827	GO:0003700\|GO:0006355
	Seca3g09232	521	SMART	brlzneu	213	289	IPR004827	GO:0003700\|GO:0006355
	Seca3g09232	521	CDD	bZIP_HBP1b-like	217	267	-	-
	Seca3g09232	521	MobiDBLite	consensus disorder prediction	1	22	-	-
	Seca3g09232	521	PANTHER	TRANSCRIPTION FACTOR TGA9	139	491	-	-
	Seca3g09232	521	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	215	259	IPR004827	GO:0003700\|GO:0006355
	Seca3g09232	521	Pfam	Seed dormancy control	298	372	IPR025422	GO:0006351\|GO:0043565
	Seca3g09232	521	ProSiteProfiles	DOG1 domain profile.	280	488	IPR025422	GO:0006351\|GO:0043565
	Seca3g09232	521	MobiDBLite	consensus disorder prediction	193	214	-	-
	Seca3g09232	521	MobiDBLite	consensus disorder prediction	156	179	-	-
	Seca3g09232	521	SUPERFAMILY	Leucine zipper domain	217	259	IPR046347	GO:0003700\|GO:0006355
	Seca3g09232	521	MobiDBLite	consensus disorder prediction	88	123	-	-
	Seca3g09232	521	MobiDBLite	consensus disorder prediction	80	179	-	-
	Seca3g09232	521	FunFam	BZIP family transcription factor	216	265	-	-
	Seca3g09232	521	Pfam	bZIP transcription factor	216	258	IPR004827	GO:0003700\|GO:0006355
	Seca3g09232	521	Coils	Coil	236	263	-	-
	Seca3g09232	521	Gene3D	-	216	265	-	-
	Seca3g09232	521	MobiDBLite	consensus disorder prediction	139	155	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g09232	Seca-Chr3	231778232	231786535	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g09232	207	521	bZIP Transcription Factor Family	AT1G08320	72.468	2.08e-172	489

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Seca3g09232		DOG1	2.7e-27	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g09232	K14431		-	gmx:100775461	767.303