Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09230 ATGATGCTTGGAATTTTTGGAGCGATTATGGTGCTAAAACTGGATTTGGTGTTAGAAGACAATGGCACAACAAAGGTAAAAAAAGATGGAATGATTAAAACATGTAGATTTGTGTGTTGCAAGGAGGGTGAACGTAAAAAGAATAAACGAGACTATTTGATTTCTAATCCTAGACCTGAAACTCGAAGTACTTGTCAAGTAAGATTAGGCATCACACTTGTAAGAGAATCTGGAAAATATAAAGTGCATGATTTTGTTCATGAGCATAATCATGTTTTGCATCTTCAAGAGACCATTCACATGTTAGCATGTCAAAGAAAATTATCTCAAGTGCAAGCTTATGAGATTGACTTGGAAAATGATTCGGGCATAAATCAAAAGGCTACATTTGAATTAATGAGCAACGAAGTGAGCCACGGAGTGAGCGGCCAGACGATTGGAGGATTTGCAGATATGAGTGAGCCACTGAGTTGCAGTGAGCCAATCTTGGTGCCTATGTGA 501 0.3812 MMLGIFGAIMVLKLDLVLEDNGTTKVKKDGMIKTCRFVCCKEGERKKNKRDYLISNPRPETRSTCQVRLGITLVRESGKYKVHDFVHEHNHVLHLQETIHMLACQRKLSQVQAYEIDLENDSGINQKATFELMSNEVSHGVSGQTIGGFADMSEPLSCSEPILVPM. 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09230 166 Pfam FAR1 DNA-binding domain 23 93 IPR004330 -
Seca3g09230 166 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 24 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09230 Seca-Chr3 231760215 231760715 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g09230 FAR1 6.7e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09230 - - lja:Lj4g3v0620710.1 139.813