Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09223 ATGAGGATTATTAATGTTGTTGAGGACAATGATTCAGGTAAGGATGGAGATGAAGACAGTGGAGACCTAGTTTCCGGTCTTTTCTGCAAGACTGTGGTTCAGTTTGAGAAATATAGAGACTTCCATGATGCATTGAGAGTTCTATGTGGTCGTTCATTGAAAAAGCTTGGCAACCCAGTTCTAGAATTTGCAATAGATTTCAATTCTAGAGCTGAGTTCTTCTGGTCTCATGGATTAATCTCAGACTTAACATTTAAAATGTTCACTTCTGTTTGTAACTATTCAAGATATGTGAGGGAATACTATAGTGGCTCTATTTCTCCTATCTGTTCAAGTGTTATGAGCCAAGTTGCACCAGCAGAACTTGAAGGGCTTCTTGTTTCTCATTCTGAAATACTTGATGTTGTTGTCATCCCATATCCCGATGCTGACGATGGTGAGGTTCCAATTGCCTATGTTGTTTGTTCACCCAATAGTTCACTAACTGAGGAAGATGTTCAAAAGTTTATTGCTAATCAGATTCATTACTACTGTTGTGCTTGA 543 0.3831 MRIINVVEDNDSGKDGDEDSGDLVSGLFCKTVVQFEKYRDFHDALRVLCGRSLKKLGNPVLEFAIDFNSRAEFFWSHGLISDLTFKMFTSVCNYSRYVREYYSGSISPICSSVMSQVAPAELEGLLVSHSEILDVVVIPYPDADDGEVPIAYVVCSPNSSLTEEDVQKFIANQIHYYCCA. 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09223 180 Gene3D - 113 179 IPR045851 -
Seca3g09223 180 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 115 176 - -
Seca3g09223 180 SUPERFAMILY Acetyl-CoA synthetase-like 117 177 - -
Seca3g09223 180 Pfam AMP-binding enzyme C-terminal domain 121 179 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09223 Seca-Chr3 231641782 231643433 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09223 116 177 Monolignol Biosynthesis Gene Families AT4G05160 74.194 2.85e-25 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09223 K16297 - gmx:100789658 121.324