Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09221 ATGGGTTTGAGAGAGTGCAATGTAGAAGACAAGAATAATAATCCATGTCTTCAAATTCAAACCCCAACTTTCATTGAATGGCTCAAACCATCTTCCTCATCTTCTTCTTTGATTGAGCATGAGTTTTTGCCTATTATAAGTAGATTCAACCAAGGAAAGCCCTTTGAAGATCAATTAGATTATCATGGGGTGCAAAAAGAAGGTTTTGAAGTAAAAGAAGAGAAAGTGGAACAGGTGACTGTGGCTTTGCACATTGGATTGCCTAACACAGGAGATCTTGATGATGATGATGAGAAGAAGAAGGTTTTTGATCATGTTAAAGAAGAAGAAGAAGCCTTGAAGGAAAAAACTTTCCATGGGTGTTCTAATTTTAACAAGCAAGAGGAGAGAAGGTTCTGGATACCAACTCCTGCACAGATCCTTGTTGGACCGATGCAGTTTGCTTGCTCCATATGCAACAAGACCTTCAATAGATATAACAATATGCAGATGCATATGTGGGGGCATGGGTCCGAATTTAGGAAAGGGCCAGACTCACTCAAAGGAACACAACCAGCAGCAATGTTAAGGCTACCGTGTTATTGTTGTGCCCAGGGTTGCAAGAACAACATCAATCATCCAAGAGCAAAGCCCTTGAAGGACTTCAAAACACACTACAAGAGAAAGCATGGTGCAAAGCCATTCATGTGTAGAAAATGTGCTAAGACATTTGCAGTTAAAGGGGATTGGAGGACTCATGAGAAGAATTGTGGCAAGTTGTGGTATTGCACTTGTGGTTCAGATTTTAAGCACAAAAGATCTCTTAAAGATCATATTAGATCCTTTGGAAAAGGTCACTCACCACATCCTTCTCTTGAAGGCTTTGAAGATGAGAGAGATTGCATTACTGGATCTGATAATGAAGATGAAGTAGTTGCTAGCTCCTCATGCATGATCTAA 939 0.4004 MGLRECNVEDKNNNPCLQIQTPTFIEWLKPSSSSSSLIEHEFLPIISRFNQGKPFEDQLDYHGVQKEGFEVKEEKVEQVTVALHIGLPNTGDLDDDDEKKKVFDHVKEEEEALKEKTFHGCSNFNKQEERRFWIPTPAQILVGPMQFACSICNKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFKTHYKRKHGAKPFMCRKCAKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSLEGFEDERDCITGSDNEDEVVASSSCMI. 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09221 312 ProSiteProfiles Zinc finger C2H2 type domain profile. 147 174 IPR013087 -
Seca3g09221 312 SUPERFAMILY beta-beta-alpha zinc fingers 214 248 IPR036236 -
Seca3g09221 312 Gene3D Classic Zinc Finger 146 169 - -
Seca3g09221 312 ProSitePatterns Zinc finger C2H2 type domain signature. 149 169 IPR013087 -
Seca3g09221 312 Gene3D Classic Zinc Finger 189 277 - -
Seca3g09221 312 SMART c2h2final6 147 169 IPR013087 -
Seca3g09221 312 SMART c2h2final6 228 248 IPR013087 -
Seca3g09221 312 SUPERFAMILY beta-beta-alpha zinc fingers 133 170 IPR036236 -
Seca3g09221 312 PANTHER ZINC FINGER PROTEIN WIP2 33 299 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09221 Seca-Chr3 231623568 231627210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09221 17 296 C2H2 Transcription Factor Family AT1G08290 55.455 3.62e-115 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g09221 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09221 - - gmx:100819306 465.692