Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09196 ATGAAGGTCATCGCTGCATATTTGTTGGCCGTATTGGGAGGGAATGCATCCCCTTCAGCTGATGATCTCAAGAACATACTCGGCTCAGTTGGAGTTGAGGCTGAGGATGAGATGATTGAGTTGCTCTTAAGTGAAGTCAAGGGTAAAGATTTCGCTGAGCTAATTGCCAGTGGAAGAGAAAAGTTGGCTTCAGTGCCTTCTGGCGGTGGTGGTGTTGCTGTTGCTGCCGCACCTGCAGCTGGAGGTGCTGGTGGTGCTGCACCTGCTGCAGAAGCAAAGGAGGAAAAGAAGGTAGAAGAGAAGGAGGAGTCAGATGATGATATGGGTTTCAGCTTATTCGACTAA 345 0.4928 MKVIAAYLLAVLGGNASPSADDLKNILGSVGVEAEDEMIELLLSEVKGKDFAELIASGREKLASVPSGGGGVAVAAAPAAGGAGGAAPAAEAKEEKKVEEKEESDDDMGFSLFD. 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09196 114 Gene3D - 1 59 IPR038716 -
Seca3g09196 114 CDD Ribosomal_P2 1 114 IPR044076 GO:0002182|GO:0003735|GO:0022625
Seca3g09196 114 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 114 IPR044076 GO:0002182|GO:0003735|GO:0022625
Seca3g09196 114 Hamap 50S ribosomal protein L12 [rpl12]. 2 114 IPR027534 GO:0003735|GO:0005840|GO:0006414
Seca3g09196 114 Pfam 60s Acidic ribosomal protein 17 113 - -
Seca3g09196 114 FunFam 60S acidic ribosomal protein P2 1 59 - -
Seca3g09196 114 MobiDBLite consensus disorder prediction 78 114 - -
Seca3g09196 114 MobiDBLite consensus disorder prediction 90 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09196 Seca-Chr3 230825332 230826522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09196 1 114 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 68.421 1.01e-33 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09196 K02943 - nnu:104586918 130.183