Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09190 ATGCAGGTTAGTGTTGATGGTCTGCTTTGCTGTACAATATCAAATGACCGTTCTGTGAAAGTATATGACGTAGTCAACTTTGACATGATGGTCATGATTCGCTTGCCATTTGTCCCGGGTGCTGTTACATGGGTTTACAAACAAGGGGATGTCAAAGCTAGACTTGCCATTAGTGATAGGAACTCATCTTTTGTGCACATATATGATGCACGTGCTGGTTCAAATGATCCTATCATCTCCAAAGAGATACATATGGGTCCTATTAAAGTTATGAAGTACAATCATGTGTATGATTCTGTAATTTCGGCAGATGCAAAGGGGATCATTGAATACTGGAACCCTACTACACTTCAATTCCCAGAGAATGAGGTCAATTTTAAACTGAAAAGTGATACTAACCTCTTTGAAATAGTAAAATGCAAGACTTCTGTTTCAGCTATTGAGGTCAGCCCAGATGGTAAACAATTTTCCATTACATCACCTGACCGTAGGATACGTGTGTTTTGGTTTCGAACGGGTAAACTAAGGCGAGTTTATGATGAATCCCTAGAGGTTGCTCAAGATCTCCAAAGAAGTGATGCTCCATTATACCGGTTGGAAGCCATTGATTTTGGTCGAAGAATGGCCGTTGAGAAGGAAATAGAGAAGACAGAAAGTGCACCTCCTCCAAATGCAGTTTTTGATGAAAGTTCTAATTTTCTTATATATGCAACCTTGCTTGGGATTAAGATCATTAATTTGCACACCAATAAAGTTGCTCGAATACTTGGAAAGGTGGAGAATAATGATAGGTTCTTAAGAATAGCTTTATACCAAGGTGATCGAAGTAGCAAAAAAGTAAGAAAGATTCCTTCAGCAGCTGCCAATGCTAATGAGAGCAAGGAGCCTTTGACAGATCCCACTCTCCTGTGTTGTGCTTTCAAAAAGCACAGGATATATTTATTCAGTCGAAGAGAGCCAGAGGAGCCCGAAGATGCAACTAAGGGAAGAGATGTGTTCAATGAAAAGCCTCCTGCTGATGAACTTTTGGCAGTTTCAGATATTGGAAAGGCAGTTACAACATCACTTCCTGACAATGTGATTCTACACACCACTATGGGTGATATTCACATGAAATTGTACCCAGAGGAATGTCCAAAAACTGTGGAGAACTTCACAACTCACTGCCGAAACGGCTACTATGATAATCTTATCTTTCACAGGGTTATCAAAGGCTTCATGATACAAACAGGAGATCCTTTGGGAGATGGTACTGGTGGGCAATCCATTTGGGGGAGGGAATTTGAGGATGAATTTCACAAGAGTTTAAGGCATGATAGGCCTTTTACAGTGTCAATGGCAAATGCGGGCCCGAATACAAATGGTTCTCAGTTCTTCATCACCACAGTGGCTACTCCATGGCTGGACAATAAGCACACTGTATTTGGTAGAGTCGTGAAGGGAATGGATGTTGTACAGGCTATAGAAAAAGTGAAGACAGACAAGACAGATAAGCCATATCAAGATGTTAAAATTCTAAATGTTACTGTGCCAAAATCTTGA 1542 0.4053 MQVSVDGLLCCTISNDRSVKVYDVVNFDMMVMIRLPFVPGAVTWVYKQGDVKARLAISDRNSSFVHIYDARAGSNDPIISKEIHMGPIKVMKYNHVYDSVISADAKGIIEYWNPTTLQFPENEVNFKLKSDTNLFEIVKCKTSVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTESAPPPNAVFDESSNFLIYATLLGIKIINLHTNKVARILGKVENNDRFLRIALYQGDRSSKKVRKIPSAAANANESKEPLTDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPADELLAVSDIGKAVTTSLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQAIEKVKTDKTDKPYQDVKILNVTVPKS. 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09190 513 CDD cyclophilin_WD40 361 508 - -
Seca3g09190 513 FunFam Peptidylprolyl isomerase domain and WD repeat-containing 1 341 511 - -
Seca3g09190 513 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 360 510 IPR002130 GO:0000413|GO:0003755
Seca3g09190 513 SUPERFAMILY WD40 repeat-like 2 257 IPR036322 GO:0005515
Seca3g09190 513 Gene3D - 353 513 IPR029000 -
Seca3g09190 513 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 470 485 IPR002130 GO:0000413|GO:0003755
Seca3g09190 513 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 373 388 IPR002130 GO:0000413|GO:0003755
Seca3g09190 513 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 457 469 IPR002130 GO:0000413|GO:0003755
Seca3g09190 513 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 399 411 IPR002130 GO:0000413|GO:0003755
Seca3g09190 513 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 442 457 IPR002130 GO:0000413|GO:0003755
Seca3g09190 513 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 356 510 IPR002130 GO:0000413|GO:0003755
Seca3g09190 513 SUPERFAMILY Cyclophilin-like 357 510 IPR029000 -
Seca3g09190 513 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 355 509 IPR044666 -
Seca3g09190 513 Gene3D - 1 352 IPR015943 GO:0005515
Seca3g09190 513 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 394 411 IPR020892 GO:0003755|GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09190 Seca-Chr3 230755633 230761515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09190 360 510 U-box Gene Family AT5G67530 47.682 8.65e-43 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09190 K12736 - gmx:100792207 1006.13