Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09188 ATGGACCCATGGCTCGACGATCTCGCCGACGACCTCCAAAGCCTAAGCTTCGCCTCCACAACTACCGCCACCGCCACCGCTGACATCAAACGCAGCACTAGCTTCGGCTCCGAAACCACCGCATCCTTAACCGCCTCCACCTCCGCCCGCCTCCCTCTCACCAAACCTCACGCGCCTTCCTCCGACCCTCGCTGGGCCGCCATCCACCGGATCCGATCAGAGTCCCCCAGCCGCCGCATCGTCCCCTCCGACCTCCGCTTCTCCCGCCGCCTCGGCTCCGGCGACATTAGCTCCGTCTACCTCGCCGAACTCAACGACGGAACCCTCCCTGTCATGTTCGCCGCTAAGGTCATGGACAAGAAAGAGCTCGTGAGTCGAAGCAAGGAAGGGAGAGCCAAAACTGAAAGAGAAATCCTCGAATTGCTTGACCACCCTTTTTTGCCTACTCTCTACTCCACCATCGATGCCACGAAATGGCTCTGCCTCCTCACCGAGTTCTGCCCCGGCGGCGACCTCCATGTTCTCCGGCAACGCCAGCCAAACAAACGCTTCATCGAACCCGCCGTCAGATTCTACGCATCAGAGGTGTTGGTTGCACTTGAATACCTTCACATGTTGGGGATAGTGTACCGTGATCTCAAGCCTGAGAACGTGCTAGTTCGATCAGACGGCCACATCATGCTCACAGACTTTGACCTGTCGTTAAAATGTGATGATTCCTCCACACCAACGGCCCAGATCATCTCTGAGCAAAACTCTCCTCACATAGGCCCACACAAGGATCCCCACGTTGAGCCCTCTCAATTCACCTCGTCTTCTTGCATAATACCCAATTGTATAGTCCCTGCAGTGTCGTGTTTCCACCCAAAACGCAAGCGGAAGAAGAAGCAAAGCCAGCGTAGTGGGCCTGAGTTTGTAGCTGAGCCCATGGATGTCCGGTCCATGTCATTTGTTGGGACCCACGAATACTTGGCTCCGGAGATCGTGTCTGGGGAGGGCCACGGTAGTGCCGTGGACTGGTGGACCTTAGGAATATTTATATTTGAATTATTTTATGGTGTGACACCCTTTAGGGGCATGGACAATGAGCTAACACTAGCAAACATTGTGGCTCGAGCCTTGGAGTTCCCAAAGGAACCCACCGTGCCAGCCACGGCAAAGGATCTTATCTCACAGTTATTGGTTAAGGACCCGACAAGGAGGCTAGGGTCAACAATGGGGGCTTCCGCGATCAAACACCACCCGTTTTTTCAAGGTGTGAATTGGGCTTTGTTAAGGTGTACACCTCCACCCTATGTGCCCCCACCTTACACTAAAGAAGCTGTATCCGATGAAACTTGTCCACAGACTCATGTTGATTATTATTGA 1368 0.5417 MDPWLDDLADDLQSLSFASTTTATATADIKRSTSFGSETTASLTASTSARLPLTKPHAPSSDPRWAAIHRIRSESPSRRIVPSDLRFSRRLGSGDISSVYLAELNDGTLPVMFAAKVMDKKELVSRSKEGRAKTEREILELLDHPFLPTLYSTIDATKWLCLLTEFCPGGDLHVLRQRQPNKRFIEPAVRFYASEVLVALEYLHMLGIVYRDLKPENVLVRSDGHIMLTDFDLSLKCDDSSTPTAQIISEQNSPHIGPHKDPHVEPSQFTSSSCIIPNCIVPAVSCFHPKRKRKKKQSQRSGPEFVAEPMDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGIFIFELFYGVTPFRGMDNELTLANIVARALEFPKEPTVPATAKDLISQLLVKDPTRRLGSTMGASAIKHHPFFQGVNWALLRCTPPPYVPPPYTKEAVSDETCPQTHVDYY. 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09188 455 ProSiteProfiles Protein kinase domain profile. 85 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09188 455 Gene3D Transferase(Phosphotransferase) domain 1 171 242 - -
Seca3g09188 455 SMART serkin_6 85 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09188 455 FunFam serine/threonine-protein kinase D6PKL2 84 170 - -
Seca3g09188 455 SUPERFAMILY Protein kinase-like (PK-like) 67 443 IPR011009 -
Seca3g09188 455 PANTHER FLIPPASE KINASE 1-RELATED 30 439 - -
Seca3g09188 455 FunFam serine/threonine-protein kinase D6PK-like 171 238 - -
Seca3g09188 455 Pfam Protein kinase domain 88 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09188 455 Pfam Protein kinase domain 314 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09188 455 Gene3D Phosphorylase Kinase; domain 1 84 170 - -
Seca3g09188 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Seca3g09188 455 FunFam serine/threonine-protein kinase D6PK-like 312 435 - -
Seca3g09188 455 Gene3D Transferase(Phosphotransferase) domain 1 311 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09188 Seca-Chr3 230740517 230745807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09188 1 455 AGC Kinase Gene Family AT3G44610 66.453 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca3g09188 Pkinase 3.2e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09188 K08286 - gmx:100792738 754.207