Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09185 ATGGAGTTTGACAATGAGTGTCCTTACTATTCCTCTTCACCATCTTCCACTTCTTCTCCAAGCCAACTCTCACCAAATTCTCAATCAGTGGTGGTGGTGCAGCAGCAGCAGGCACAAAGCTCCTCTCACAAGAGAAAAGCAGGAAGAAAGAAGTTCAAGGAAACAAGGCACCCAGTGTATAGAGGTGTTCGGCAGAGAAACGGAAATAGATGGGTGTGTGAAGTGAGGGAACCAAACAAGAAATCAAGGATATGGCTTGGGAGTTACCCTACGCCAGAAATGGCAGCTAGGGCACATGACGTGGCTGTCCTAGCACTTAAGGGAACCTCAGCAGTGTTCAATTTCCCTGATTCAGCTTCTCTTCTTCCAGTTGCAAGGTCTTGTTCAGCTCTAGATATAAGAGAAGCTGCATCAAAAGCCGCATATGCACAGGATCAGGCTTTTCCACCAACCACCCCTTCTTCTTCCTCTTCTGTTAATAATAACAATTTATTCGTGGAAACAAAAAGGGTAGATGATATTGGTGTTATTAAAAGCCCATCTTCTTCGACAGAAATGTTTTTTGATGAGGAAGCGTTGTATAATATGCCGGGTCTTTTAGATAGTATGGCGGAGGGTTTGCTTATTACGCCACCATCCATGAAGAGAGCATTTGATTGGGATGATGTTGATTATGAAACGGACCTAACTCTATGGACTGACTGA 705 0.4411 MEFDNECPYYSSSPSSTSSPSQLSPNSQSVVVVQQQQAQSSSHKRKAGRKKFKETRHPVYRGVRQRNGNRWVCEVREPNKKSRIWLGSYPTPEMAARAHDVAVLALKGTSAVFNFPDSASLLPVARSCSALDIREAASKAAYAQDQAFPPTTPSSSSSVNNNNLFVETKRVDDIGVIKSPSSSTEMFFDEEALYNMPGLLDSMAEGLLITPPSMKRAFDWDDVDYETDLTLWTD. 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09185 234 CDD AP2 60 118 IPR001471 GO:0003700|GO:0006355
Seca3g09185 234 Gene3D AP2/ERF domain 59 117 IPR036955 GO:0003700|GO:0006355
Seca3g09185 234 Pfam AP2 domain 58 108 IPR001471 GO:0003700|GO:0006355
Seca3g09185 234 SMART rav1_2 59 122 IPR001471 GO:0003700|GO:0006355
Seca3g09185 234 MobiDBLite consensus disorder prediction 8 42 - -
Seca3g09185 234 FunFam Ethylene-responsive transcription factor 2 58 117 - -
Seca3g09185 234 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Seca3g09185 234 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700|GO:0006355
Seca3g09185 234 ProSiteProfiles AP2/ERF domain profile. 59 116 IPR001471 GO:0003700|GO:0006355
Seca3g09185 234 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 12 233 IPR045277 GO:0003700
Seca3g09185 234 SUPERFAMILY DNA-binding domain 59 118 IPR016177 GO:0003677
Seca3g09185 234 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09185 Seca-Chr3 230673829 230674533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09185 8 233 AP2-EREBP Transcription Factor Family AT5G51990 45.374 1.48e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g09185 AP2 5.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09185 - - gmx:100816109 265.774