Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09178 ATGAGGTTGGAGAAATGTTGGTTTTGTTCTTCAACCATATACCCTGGACACGGAATCCAGTTTGTCCGTAATGATGCTAAGATTTTTCGGTTCTGTAGATCCAAGTGCCACAAGAACTTTAAAATGAAGAGGAATCCACGTAAAGTAAAATGGACAAAGGCATATCGGCGAGTGCATGGAAAGGATATGACACAGGATTCGACCTTTGAGTTTGAGAGAAAGAGAAACAGACCTGAGAGATACGACAGGAATCTTGCGGAGAATGTCCTCAAGGCCATTCCTAAGATTGATAAGATCAGGGTCAGCAGGGAGGAGAAACACCATAAGAATAGGTTCTTCTTTGACTCCACTGTTATATATATGTCTGTTTGCAAGGTGTTTTCTTTTGACTCTCTGCTGACATTTTGCAAATTCTTCATTAGGATGAAAGGCAAGAAGGCAAAACTGCAGAGGGAGGCAGTGAGGGAGTTGGAGCAGGGCATCAGTTTGGTCAAAGCTCCTTCTGTGCTTCAACAGGAGCCATCTCTCACTTTACCAAAGATCAAAGTCAAGGTTTCTCAACAGCAATCAGAGGAAAATCATCCCATGGAAGAGTGA 597 0.4271 MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLAENVLKAIPKIDKIRVSREEKHHKNRFFFDSTVIYMSVCKVFSFDSLLTFCKFFIRMKGKKAKLQREAVRELEQGISLVKAPSVLQQEPSLTLPKIKVKVSQQQSEENHPMEE. 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09178 198 Pfam Ribosomal protein L24e 1 65 IPR000988 -
Seca3g09178 198 CDD Ribosomal_L24e_L24 1 54 IPR000988 -
Seca3g09178 198 SMART 4TRASH 6 44 IPR011017 -
Seca3g09178 198 PANTHER 60S RIBOSOMAL PROTEIN L24 1 111 IPR000988 -
Seca3g09178 198 Gene3D Ribosomal protein L24e 1 68 IPR038630 -
Seca3g09178 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 56 - -
Seca3g09178 198 FunFam probable ribosome biogenesis protein RLP24 1 67 - -
Seca3g09178 198 ProSitePatterns Ribosomal protein L24e signature. 8 25 IPR023442 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09178 Seca-Chr3 230621189 230624432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09178 1 198 Cytoplasmic Ribosomal Protein Gene Family AT2G44860 58.081 1.60e-74 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09178 K02896 - gmx:100306000 318.931