Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09158 ATGGAGTTTTGGGGTGCTGAGGTTAAGGTTGGGGATTCTGTTAAGGTAGACCCAAGCGAATTTGAGGCATGCATACACCTTTCTCAGGCGGCACTTGGTGAGGCCAAGAAAGACAAAGCAAGTGAACCTGTGGTTCTTTACTTGAAAGTTGGTGACCAGAAATTTGTTTTGGGAACCCTTTCCAGGGACAAAATTCCCCAGATATCTCTTGAAATAGTTCTGGACAAGGAGTTTGAGCTTTCCCACAATTCTAAAACTGCCAGTGTCCATTTCTGTGGATACAAAGCATATTATGCGGGTGATGATAGTGAGGAGGATGACTTTACAGATAGCGATGAAGATATCCCATTGGTGAATGCAGAGAATGGAAAACCTGAAACAAAAGCTCAAGCCTTAAAGGTTCCTGGGTCTAAAAAGCCTGATGCCAAGAGTGGTGCATCAGCTAAACAAGTTAAGGTTGTTGATCCAAAGAAAGATGAAGAGGATGATTCTGATGATGATTCTGATGAAGATGATGAATTTGGAAGTTCTGACGAAGAGATGGAGGATGCTGATAGTGATGAGGACAGTGAGAGTGATGAAGATGATGAGGAAGAGACCCCTGTTAAGAAGGTGGATGTGGGAAAGAAGAGGCCCAATGACTCTGCATCAAAAACTCCAGTTTCTACCAAGAAAGCAAAGAATGCTACTCCTGAAAAGACTGATGGTAAGAAATCTGGACACACAGCAACTCCTCACCCTATGAAGAAAGGTGGAAAGACTCCCAACAGTGAATCCAAGGACCAGACTCCCAAGTCTGCTGGACAAATTTCTTGCAAAAGTTGTAGCAAGACATTCAACTCTGAAGCTGGTTTTCAACAACATAACAAGGCTAAGCATGGTGGTCAGTGA 891 0.4332 MEFWGAEVKVGDSVKVDPSEFEACIHLSQAALGEAKKDKASEPVVLYLKVGDQKFVLGTLSRDKIPQISLEIVLDKEFELSHNSKTASVHFCGYKAYYAGDDSEEDDFTDSDEDIPLVNAENGKPETKAQALKVPGSKKPDAKSGASAKQVKVVDPKKDEEDDSDDDSDEDDEFGSSDEEMEDADSDEDSESDEDDEEETPVKKVDVGKKRPNDSASKTPVSTKKAKNATPEKTDGKKSGHTATPHPMKKGGKTPNSESKDQTPKSAGQISCKSCSKTFNSEAGFQQHNKAKHGGQ. 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09158 296 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Seca3g09158 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 270 296 IPR013087 -
Seca3g09158 296 MobiDBLite consensus disorder prediction 228 242 - -
Seca3g09158 296 Gene3D Nucleoplasmin core domain 1 100 - -
Seca3g09158 296 MobiDBLite consensus disorder prediction 103 272 - -
Seca3g09158 296 FunFam Histone deacetylase HDT1 1 100 - -
Seca3g09158 296 ProSitePatterns Zinc finger C2H2 type domain signature. 272 293 IPR013087 -
Seca3g09158 296 MobiDBLite consensus disorder prediction 257 272 - -
Seca3g09158 296 MobiDBLite consensus disorder prediction 160 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09158 Seca-Chr3 230200821 230203667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09158 1 293 C2H2 Transcription Factor Family AT5G03740 38.050 4.45e-52 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09158 - - gmx:100795506 400.979