Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09154 ATGTTTTCTTTGACCCTTGCATCATTAAGTTGTTTTCTGTTACTAAGGCTTAACTTATTGTCAATTGATTCATATAGTCGAGGTGATACTCAAGAATTTGCTGATCTAAACAAATTAGCTAAGCGCTTCCTTAAAGGAACCTATAATGCTTCAGAAGGTGAAGTAAAAGATGCACTCTCACGGGCTTATGTCCAAGAAGTGGTTGAAGAGCTACGTAAAGGGGAGCAGGGAGAATGTCCAATATGTCTTGAAGCATTTGAAGATGCAGTGTTGACGCCTTGTGCTCACCGCTTATGCCGGGAATGCCTCTTGGCAAGTTGGCGAAATTCTACTTCTGGTTTATGTCCTGTTTGTAGGAAAATAATCAGCAAGCAGGATCTTATCACTGCCCCTACTGAGAGTCGGTTTCAAATTGATATTGATAAGAACTGGGTAGAGTCATGCAAGATAACTGTTCTTTTGAATGAACTTGAAAAACTTCGCTCATCAGGCTCCAAGAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTACTCGGAATAACATTTCATTTGTTCGTCTTGATGGGACTTTGAGTCAGCAGCAGCGGGAAAAAGTAATCAAACAATTCTCAGAAGACAGCGACACCCTGGTGTTGTTGATGTCACTAAAAGCTGGTGGAGTCGGTATAAACCTAACAGCAGCTTCCAATGCTTTTGTCATGGACCCATGGTGGAATCCAGCTGTTGAAGAACAAGCTGTTATGCGTATTCATCGCATTGGTCAAACAAAGAAGGTGGCCATCAAACGATTTATTGTGAAGGGGACAGTTGAGGAGAGAATGGAGGCAGTGCAAGCACGTAAACAACGAATGATTTCTGGTGCCTTGACCGATCAAGAAGTTCGAACTGCACGGATTGAAGAGTTGAAGATGCTTTTTACTTAG 945 0.4222 MFSLTLASLSCFLLLRLNLLSIDSYSRGDTQEFADLNKLAKRFLKGTYNASEGEVKDALSRAYVQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNSTSGLCPVCRKIISKQDLITAPTESRFQIDIDKNWVESCKITVLLNELEKLRSSGSKSIVFSQWTAFLDLLQIPFTRNNISFVRLDGTLSQQQREKVIKQFSEDSDTLVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIKRFIVKGTVEERMEAVQARKQRMISGALTDQEVRTARIEELKMLFT. 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09154 314 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 33 314 - -
Seca3g09154 314 Pfam Helicase conserved C-terminal domain 149 261 IPR001650 -
Seca3g09154 314 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 303 IPR027417 -
Seca3g09154 314 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 149 314 IPR001650 -
Seca3g09154 314 SUPERFAMILY RING/U-box 65 125 - -
Seca3g09154 314 ProSiteProfiles Zinc finger RING-type profile. 79 119 IPR001841 -
Seca3g09154 314 Gene3D - 126 312 IPR027417 -
Seca3g09154 314 Pfam Zinc finger, C3HC4 type (RING finger) 76 124 - -
Seca3g09154 314 ProSitePatterns Zinc finger RING-type signature. 94 103 IPR017907 -
Seca3g09154 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 125 IPR013083 -
Seca3g09154 314 SMART helicmild6 178 261 IPR001650 -
Seca3g09154 314 CDD SF2_C_SNF 145 272 - -
Seca3g09154 314 SMART ring_2 79 118 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09154 Seca-Chr3 230147344 230152034 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09154 13 314 RAD5 or RAD16-like Gene Family AT5G22750 82.951 8.41e-178 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09154 K15505 - gmx:100794558 540.806