Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09153 ATGGGGAGCAAGGTCACCGACCACCACCTCTCCACCGTCCGATCCATTGTCGGTTCCGAATTCACCGACATGGACATCATCAGAGCCCTTCACATGGCCAAAAACGACGTCACTGCAGCCATCAACATCATCTTCGACAGTACACACACCCCCAAATTCAAACCCCCCCGCACCAACAACAACCCGCCACCACGAGTTTCTCCTCCAAAAAAATTGACCCCTCCCACCGTTACTGCCAGCTCCAAGGCCAATGCCGATGGAGGAGACAGCAATGACTGCTCTGTCGGGTCCGATGATTGGTGGTTCGTGGGTTCTAGCGAAGTGTCAGGGTTGTCCACTTGTAAAGGGAGGACTATAAATTCCGGTGATGCAGTGCTTTTCAAGTTCCCCACAAAGAAACACTCTGCCTCTCCCTCTCCTGGTAAAGGGTTCGGAAGAGTAGCAACATGTTCAGAGATAGTTCGATTCTCCACTGAACAAGATGGAGAGATTGGTAGAATACCAAACGAATGGGCTCGGTGTCTCTTGCCTCTTGTGCGGGGTAATAAGGTTAGAGTTGAGGGGCACTGTAAATTTGCGCCTAATGTTTTGGGCATCATGGACACCATTGTCTTGTCAGTCAGTGTCTTTATCAATAGGTCAATGTTTGTTAAGCATCACCAGGTTTCTCTCAAAGATGCTACCAATTCCACGGATGAATCAGTGTTCCATCCCCTTCCAACCCTGTTTCGGTTGCTAGGGCTGAGCCCTTTTAAGAAGGCAGAGTTGACTCCTGGTGACTTCTATTCCAACAAGCGTCCTTTCAGCCAAAGGGTCACATTACTACATGCCAAGTCTGAGCGTCCTTCTCAAAATGGTTATGAGAATGAAAATGAGGATTCCATTTCTGAAATTGATGTTGACAACATTGTTGGTGTCGGATCAAGCTTAGAGTTAGAGGAAATGGATCCACCTGGGAATCTTCTGTGTGAACTGCGGCCCTATCAAAAACAGGCTCTTTATTGGATGATCCAGATGGAGAAGGGACGAACTATGGATGAGACAGCAACAACCCTTCATCCATGTTGGGAGGCATATCGCCTGGCTGACAAGAGGGATCTTGTTATTTATTTGAACGCATTTTCTGGTGAAGCCACAATAGAATTTCCTAGCACCCTTCAAATGGCCAGAGGAGGAATTTTGGCAGATGCTATGGGGCTTGGAAAGACCATTATGACCATATCCCTTCTTCTTGCCCATTCAGGGAGGGGTGGATCACTAGGCAGTCAACCCATAACTCAGTCCTTTATTGAAGGTGGTGAAGTTAGTGACACTGATATGGTGCACAGTGTTTCAAACATACCAAAGAAGGCAGCCAAATTTACTGGTTTTGACAAACTGATAAAGCAAAAGAATGCTCTAACAAGTGGTGGCAACTTGATAATATGTCCCATGACTCTTCTTGGGCAGTGGAAGGCAGAGATTGAAACTCATGCGCACCCTGGGTCCCTGTCTGTATATGTTCATTATGGACAAAGTAGGCCCAAAGATGCAAAATATCTAGCTCAAAATGATGTTGTGATTACTACATTCGGAATTTTGACCTCAGAATTTACCAGTGAGAATGCAGAGGATAATGGTGGACTCTTCTCAATTCGGTGGTTTAGAGTGGTTCTTGATGAGGCACATACTATAAAATCTTCTAAAAGCCAAATTTCTATGGCAGCTGCTGCTCTAACTGCTGACAGACGTTGGTGTCTTACTGGGACTCCTATCCAGAACAGCCTTGAGGATGTTTACAGTCTTCTTCGGTTTCTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTAA 1830 0.4628 MGSKVTDHHLSTVRSIVGSEFTDMDIIRALHMAKNDVTAAINIIFDSTHTPKFKPPRTNNNPPPRVSPPKKLTPPTVTASSKANADGGDSNDCSVGSDDWWFVGSSEVSGLSTCKGRTINSGDAVLFKFPTKKHSASPSPGKGFGRVATCSEIVRFSTEQDGEIGRIPNEWARCLLPLVRGNKVRVEGHCKFAPNVLGIMDTIVLSVSVFINRSMFVKHHQVSLKDATNSTDESVFHPLPTLFRLLGLSPFKKAELTPGDFYSNKRPFSQRVTLLHAKSERPSQNGYENENEDSISEIDVDNIVGVGSSLELEEMDPPGNLLCELRPYQKQALYWMIQMEKGRTMDETATTLHPCWEAYRLADKRDLVIYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTIMTISLLLAHSGRGGSLGSQPITQSFIEGGEVSDTDMVHSVSNIPKKAAKFTGFDKLIKQKNALTSGGNLIICPMTLLGQWKAEIETHAHPGSLSVYVHYGQSRPKDAKYLAQNDVVITTFGILTSEFTSENAEDNGGLFSIRWFRVVLDEAHTIKSSKSQISMAAAALTADRRWCLTGTPIQNSLEDVYSLLRFLRIEPWGHWAW. 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09153 609 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 96 609 - -
Seca3g09153 609 Pfam SNF2-related domain 328 606 IPR000330 GO:0005524|GO:0140658
Seca3g09153 609 MobiDBLite consensus disorder prediction 48 91 - -
Seca3g09153 609 MobiDBLite consensus disorder prediction 56 71 - -
Seca3g09153 609 SMART HIRAN_2 103 211 IPR014905 GO:0003676|GO:0008270|GO:0016818
Seca3g09153 609 MobiDBLite consensus disorder prediction 73 91 - -
Seca3g09153 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 312 607 IPR027417 -
Seca3g09153 609 Gene3D - 375 430 IPR038718 -
Seca3g09153 609 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 383 602 IPR014001 -
Seca3g09153 609 SMART ultradead3 321 608 IPR014001 -
Seca3g09153 609 Gene3D - 452 609 IPR038718 -
Seca3g09153 609 CDD DEXDc_SHPRH-like 325 609 - -
Seca3g09153 609 Pfam HIRAN domain 103 207 IPR014905 GO:0003676|GO:0008270|GO:0016818
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09153 Seca-Chr3 230141169 230144997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09153 1 609 RAD5 or RAD16-like Gene Family AT5G22750 62.264 0.0 769
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca3g09153 SNF2_N 3.2e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09153 K15505 - gmx:100794558 1000.73