Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09151 ATGAAGCTTTCGCCAAAAGCCTCTGAAAAATCACAGGAACTTTCTGATTTGACGATGGAACCACCGGTTGCGAAGCGAAGGGGTCGCCCGCCAAAACGGAGAAGAAAAGATGATGAAACTGTGACGGTTGATCCAAAATTGATCCCCGAAACGAAGAAAACGATGATATCAATGGCATTGATTGGGCGATACGTGCTGAAAGAGTTCCCTAGAAGCAATGTTCTTCTCGGAAAAGTCGTGCATTACGAGAGAGGATTATACAGAGTCACGTATGAGGATGGCGGTTGCGAGTATTTGGATAGCAGCAAAATTCGTAGGTTAATTCTCGATGACAGTTATTTCGATGACGATTTGACTCAAAGGAAGAGTGAATTGGAGGAATTGCTGTTGCCAAAGATTGCAGATGCATCGGAGAAGGACTCGAGTGAATTGCACGGTGATTTAGCGATTGAAAACGAAGAGGAACGAGATGAAACGGATGTTGATTCGTGTTCTGATGCTGAGATACCTTCAACGGAGACGCCGTTGCCGCCGCCGTTGTCGTTACCGCCATCTTCAGGAACTATTGGTGTGCCAGAGCGGTATGTTTCGCACCTGTTTGCAGTTTATGGATTTCTACGATCGTTCAGCATTCGCTTGTTTCTGAGCCCGTTTACTTTGGACGAGTTCGTTGGCTCTCTTAACTGTGAAGTTTCGAACACGTTGTTTGATGCCATTCATGTTTCCTTGATGCGTGCTTTGAGGCGCCATCTTGAAAACCTTTCGGCCGAGGGCTCGCGGCTTGCATCAAAATGCCTTAGGTGCAATGATTGGAGCTTGCTTGATACATTGACTTGGCCTGTTTTTGTGATTCAATATTTATCAGTTAATGGATACACAAAGGGACCTGAGTGGAAAGGATTTTATGACGAGATTTTTTGTGGCGAGTATTATTTATTGCCTGCCAGTAGGAAGTTAGTAATATTGCAAATTCTCTGTGATGATGTTTTGGACTCTGAGGAATTAAAAGCTGAAATGAACATGCGTGAAGAATCAGAGGTTGGGATGGATTATGATGCTGAAGATATCCTTCCTGCAGAAAATTGGCCAAGAAGAGTCCATCCAAGATATACCAAAACTACTGCTTGCAAGGACAATGAAACTAAGAAGTTTGTTTCAGAATTAAATGCTGTGAATCTACATGGTAATGCTGAGGATGGTGATGTTGATGGAAATGGAGATGAATGTCGCCTCTGTGGCATGGATGGGACCTTACTTTGTTGTGATGGATGTCCTGCTGTTTATCATTCAAGGTGTATTGGTGTGATGAAAGTGCATATACCAGAAGGGGAATGGTATTGTCCAGAGTGCAAAATAAATATGATTGGGCCTACAATTACACGGGGAACAATACTTAAAGGGGCTGAAATATTTGGAAAGGATATGTATGGGCAACTTTTCATGGGTACTTGTGACCACTTACTGGTGCTCAATATTGACAATGGTGAATTTTGTCTTAAATACTACAATCAGAATGACATTCCTCAAATTCTCCAAGTGCTTTATGCGTCCATGCAACATAGACCTATATACTATGATATTTGCATGGCAATGTTACAATATTGGAACATTCCAGAAAGCTTCTTACACCATTGTGTTACAACTGGACCACATGTAAACTCAGCAAATACAAAGACAGATGCAATTTTCTCTGCTGCATTACTTCCTCCTATGGTTGAAGAAGATCATAAAGCTGGTCGTTTGTTGAAAGCAGAGAACGGTCTAACATCAATAAGTGGGAATTTTAGTGATACTATGGTGCCATCTCTTGATGCTTCATTGGTTAACACTCAAAGTCTTGATTGTGAAAGCAGTGGCAATGCTAAAACTAAGGAATCCCCTACCATGAATATGATGCTTCATGAGGAAACTGCAATGGATTCGGTTGTTTCAACTGTTAACTACCAATCTGGCATGAACTATCAAAATTCTGTTAATAGGTCAACTGCAGTCGATCCTACCAGGTGCTCCTTGGTAAGCAGCCAATTCCATAATTATGGTCATGCAAATGACATGGGGTTGCCTTTGAATTTGTCTTTGCAAACTAAAGACGGTCAAGCTGGTTTTGGAAAGTCTAAAGGCAATATGACTAATAATTCTGTGTACATGGGTTGCTCCTATAAACCTCAGTCATACATTAATTACTATATGCATGGTGATTTTGCTGCATCTGCTGCTGCTAACTTGGCTATTCTTTCTTCAGAGGATTCTAGATCTGAGGGTCATGTGTCGATCAACCTGAGAAAAGCTACTTCTGAAAACACTTATTTGCTGACAAAAGCTTTCTCGCTAACAGCTTCACGTTTCTTTTGGCCAAGTTCTGAGAAGAAGCTTGTGGAGGTTCCAAGAGAAAGGTGTGGCTGGTGCCTTTCTTGTAAAGCCTCTGTTTCAAGCAAGAAAGGATGCATGTTAAATCAAGCCGCTCTAAGTGCCACCAAAAGTGCTATGAAAATCCTTTCTGGTCTTGCACCTGTAAGGAGTGGAGAGGGAATTATCCCTAGCATTATTACATATATTATATATATGGAGGAAAGCTTATGTGGTTTAATAGATGGGCCCTTTCTAAATGAAAACTATAGAAAGCAATGGTGTAAACAAGTGGAATGGGCCACATCTTTTAGTGATATAAAGCCCCTATTACTCAAACTTGAGGAGAACATTCGTGCAATTGCTTTTCGTGGTGACTGGGGGAAGCTGATGGATGATTGGTTGGTTGATTTTTTTACAATACAGAATGCTGCATGTTCTCTTGGAACAACACAGAAACGTGCAGCAGGTGGCAGGCGTAAGAAACAGTTTTCTATCAATGAAGTTAGAGCTGGTGATTGCAATGAAAACTTTGTCTGGTGGCATGGTGCCAAAGTTACCAAATCTGTATTTCAGAAAGCTGTTTTGCCAAAATCAATGGTCAGAAAAGCAGCTCGCCAAGGTGGTTTTAAGAGAATTTTGGGCATTGTCTATGCTGATGGCTTTGAAATTCCTAAAAGAAGCCGACAGCTAGTTTGGAGAGCTGCAGTTCAAATGAGTAGGAATGCATCACAACTGGCACTTCAGGTCCGATATCTAGATTTTTTTATCAGATGGAGTGATCTTATTTGTCCTGAGCATAACTTCCTGGATGGGAAAGGTCAAGATACTGAAGCTTCTGCTTTTAGAAATGCAAAAGTTTATGACAAAAAACATGTAGAGGGAAAATTTTTTTATGGTATAGCTTTTGGGAGCCAAAAGCATCTTCCTTCTCGTGTAATGAAAAATGTTAAAGTAGAGCAAGGACCAGAAGGAAAGGAGAAGTACTGGTTTTCTGAAACGCACATTCCTTTATATTTGGTAAAAGAGTATGAAGTAGGCAATGAAAAAGTGCCATTTGATAAAGAGCAGTTGAATATTGCATCTCAGTTGCACAAAAGGCGGTTCAAAGCTACCCACAAGGACTTATTGTTTTACCTCACTTGCAAGAGAGACAAATTGGACATGTTGTCATGTTCTGCATGTCAGCTGGGTGTTTTCTTAGGGAATGCTCTCAAGTGCTGTGTATGTCAAGGTTATTGTCATAAGGGATGTTCCATAAGCTCAACAGTCTCTACATATGAAGAAGTTGAGTTCCTAACCACATGCAAACAATGTTATCATGCCAAATTACTTACTAAAAAAGAGACCAGTAATGAATCTCCAACCAGTCCCTTACTCTTGCAAGGACAAGAACATTGCTCTTTGACAGTTCTGAAGGGGCAAAGGCCTGAACGTTATGATCAAGCACTGAGATCTACCAGGACAAAGGATAGTCATCCTGACAGGAAACAAATTGCTCCTGATTCCCCTTTGGAAACAAAAAGCCGGCGCAGAAACTGTTCTTGGGGTATTATATGGAAAAAGAAGAATAGTGAAGATACAGGCATTGATTTCAGGTTCAAGAACATAATTCTAAGGGGAGGTTCAGGCTTGCCTCAATTGGAACCTGTTTGTCGCTTGTGCCATAAACCATATAGGTCTGATATAATGTATATTTGCTGTGAAACATGCAAAAATTGGTATCATGCTGAAGCTGTTGAACTTGAAGAGTCCAAAATTTTTGATGTGCTGGGCTTCAAATGTTGCAAGTGTCGCAGGATAAAGTCACCTGTGTGTCCTTACTCTGTTTTGATGTGCAATAAGCAGGAGGGCAATAATTCACACTCTAGGGTTACAAAGAAAGAACATTCTGGAGCAGCTTCTGATTCTGGAACAGCTACTGACATGAGATTGTGTGAGCCTGCTACTCCTATCTTTCCCATAGAGGATGTCTCTAGCCAAGAGAATGATCCTCTGTCGTTCTCTCTTTCGAGTGTTGAGCTGATTAAAGAACCCAAGTTAGATGCAGATTTTGAGTGTAATACTGTCTCTGGGCCAGGACTTCATAAATTACCAGTGAGAAGGCAACGTGAGGGGGACAATAATGGTTCTTTTGGAGGTAAACTTCTGCATACTGGATTTTCAAGACACAATGAAATGGGTAATCTGTCCAAATCTGCAGAGGTTTTATCACCTTGTGTTGAAAATGGCTCTGCTGTGCTCGCCGACTGCAATCTTCGGAATAACTCTCAAATTGTGAATTATGAGTACATGCAGTCTAAACCCCATACCTTCTCTTTGACTGAACTGCTGCGTCCAGATAATAGTAGTCAATTTGAGGAAGCTGATGCATCTGGGGACTTGTCAGGATATACAAAAAATTCTTGCACATTAGGTGTTGCTGAAGCATCTGACTTGGGACCTACAATTTCATTGCAAGTAAATGTAAATAATTGTTTGCAATGTTTACAAATGGATCCAGCCCCTGATCTCTATTGTCAGATTTGTGGGATTTGGATTCACAGCCAATGTTCACCTTGGATTGAATCATCATCTAGGCTTGACAATTGGAAATGTGGTAATTGCCGGGAATGGCAATAG 4968 0.41 MKLSPKASEKSQELSDLTMEPPVAKRRGRPPKRRRKDDETVTVDPKLIPETKKTMISMALIGRYVLKEFPRSNVLLGKVVHYERGLYRVTYEDGGCEYLDSSKIRRLILDDSYFDDDLTQRKSELEELLLPKIADASEKDSSELHGDLAIENEEERDETDVDSCSDAEIPSTETPLPPPLSLPPSSGTIGVPERYVSHLFAVYGFLRSFSIRLFLSPFTLDEFVGSLNCEVSNTLFDAIHVSLMRALRRHLENLSAEGSRLASKCLRCNDWSLLDTLTWPVFVIQYLSVNGYTKGPEWKGFYDEIFCGEYYLLPASRKLVILQILCDDVLDSEELKAEMNMREESEVGMDYDAEDILPAENWPRRVHPRYTKTTACKDNETKKFVSELNAVNLHGNAEDGDVDGNGDECRLCGMDGTLLCCDGCPAVYHSRCIGVMKVHIPEGEWYCPECKINMIGPTITRGTILKGAEIFGKDMYGQLFMGTCDHLLVLNIDNGEFCLKYYNQNDIPQILQVLYASMQHRPIYYDICMAMLQYWNIPESFLHHCVTTGPHVNSANTKTDAIFSAALLPPMVEEDHKAGRLLKAENGLTSISGNFSDTMVPSLDASLVNTQSLDCESSGNAKTKESPTMNMMLHEETAMDSVVSTVNYQSGMNYQNSVNRSTAVDPTRCSLVSSQFHNYGHANDMGLPLNLSLQTKDGQAGFGKSKGNMTNNSVYMGCSYKPQSYINYYMHGDFAASAAANLAILSSEDSRSEGHVSINLRKATSENTYLLTKAFSLTASRFFWPSSEKKLVEVPRERCGWCLSCKASVSSKKGCMLNQAALSATKSAMKILSGLAPVRSGEGIIPSIITYIIYMEESLCGLIDGPFLNENYRKQWCKQVEWATSFSDIKPLLLKLEENIRAIAFRGDWGKLMDDWLVDFFTIQNAACSLGTTQKRAAGGRRKKQFSINEVRAGDCNENFVWWHGAKVTKSVFQKAVLPKSMVRKAARQGGFKRILGIVYADGFEIPKRSRQLVWRAAVQMSRNASQLALQVRYLDFFIRWSDLICPEHNFLDGKGQDTEASAFRNAKVYDKKHVEGKFFYGIAFGSQKHLPSRVMKNVKVEQGPEGKEKYWFSETHIPLYLVKEYEVGNEKVPFDKEQLNIASQLHKRRFKATHKDLLFYLTCKRDKLDMLSCSACQLGVFLGNALKCCVCQGYCHKGCSISSTVSTYEEVEFLTTCKQCYHAKLLTKKETSNESPTSPLLLQGQEHCSLTVLKGQRPERYDQALRSTRTKDSHPDRKQIAPDSPLETKSRRRNCSWGIIWKKKNSEDTGIDFRFKNIILRGGSGLPQLEPVCRLCHKPYRSDIMYICCETCKNWYHAEAVELEESKIFDVLGFKCCKCRRIKSPVCPYSVLMCNKQEGNNSHSRVTKKEHSGAASDSGTATDMRLCEPATPIFPIEDVSSQENDPLSFSLSSVELIKEPKLDADFECNTVSGPGLHKLPVRRQREGDNNGSFGGKLLHTGFSRHNEMGNLSKSAEVLSPCVENGSAVLADCNLRNNSQIVNYEYMQSKPHTFSLTELLRPDNSSQFEEADASGDLSGYTKNSCTLGVAEASDLGPTISLQVNVNNCLQCLQMDPAPDLYCQICGIWIHSQCSPWIESSSRLDNWKCGNCREWQ. 1656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09151 1655 MobiDBLite consensus disorder prediction 1400 1423 - -
Seca3g09151 1655 Pfam PHD-finger 409 451 IPR019787 -
Seca3g09151 1655 SUPERFAMILY FYVE/PHD zinc finger 1604 1652 IPR011011 -
Seca3g09151 1655 MobiDBLite consensus disorder prediction 1265 1290 - -
Seca3g09151 1655 ProSiteProfiles Zinc finger PHD-type profile. 406 453 IPR019787 -
Seca3g09151 1655 MobiDBLite consensus disorder prediction 1 41 - -
Seca3g09151 1655 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1329 1387 IPR013083 -
Seca3g09151 1655 Pfam DDT domain 196 250 IPR018501 -
Seca3g09151 1655 ProSiteProfiles DDT domain profile. 193 253 IPR018501 -
Seca3g09151 1655 CDD PHD2_CHD_II 409 450 - -
Seca3g09151 1655 SUPERFAMILY FYVE/PHD zinc finger 1329 1387 IPR011011 -
Seca3g09151 1655 ProSitePatterns Zinc finger PHD-type signature. 409 450 IPR019786 -
Seca3g09151 1655 SMART testlast3 193 253 IPR018501 -
Seca3g09151 1655 SUPERFAMILY FYVE/PHD zinc finger 386 452 IPR011011 -
Seca3g09151 1655 SMART PHD_3 1333 1381 IPR001965 -
Seca3g09151 1655 SMART PHD_3 408 451 IPR001965 -
Seca3g09151 1655 SMART PHD_3 1607 1652 IPR001965 -
Seca3g09151 1655 SMART PHD_3 1173 1222 IPR001965 -
Seca3g09151 1655 MobiDBLite consensus disorder prediction 140 184 - -
Seca3g09151 1655 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 400 455 IPR013083 -
Seca3g09151 1655 PANTHER PHD FINGER FAMILY PROTEIN 137 1617 - -
Seca3g09151 1655 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 298 340 IPR028942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09151 Seca-Chr3 230121698 230130386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09151 283 548 EF-hand Containing Proteins AT5G22760 47.902 2.83e-75 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Seca3g09151 DDT 7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09151 - - gmx:100808614 2333.52