Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09121 ATGGCTTTAACTTGGCCGCACCTGCTGCACTTTCGTTCTCAACCTTTGCTCGCGCGCACCAACTACGTCTTCTTCTCCGATCTTACCGAATTCCGCTCCGTTGAACCTCCATGCCTTGATTCCCTCACTCTTCTCCGCCGGAACAAGATCTCTGTTCCATCTCTACCGGCGCTGAAACCAGTGAAATGCATCGGTAGATCCACGGAGGAGAAGCAGTGGAGCGACGCCGAAACCGCTGTATCGGACTCCGAAGAAGCTGGAGATGATGCAAATGGTCAGGCTCCAAGCCGAACTTCCGTTCCTGCAAACGACCGCGTTGAATCTCAGAGGATTGCCACCACCTCTTCTGGCGATTCTATCTCTCTCGGAATTCGGGAACCGGTTTATGAAGTTGTAGAAGTGAGATCAAATGGGACAGTATCGACTAGAAAAATCAACAGGAGACAATTACTGAAGTCAAGTGGTCTTCGTCCGAGAGACATTCGAAGTGTGGATCCATCATTGTTTTTGACAAATTCAATGCCTTCGTTGCTGGTCCGGGAGTATGCTCTACTTCTAAATCTGGGTTCACTACGAGCAATAGCAATGCAAGATTGTGTACTTATATTTGATTATAATCGTAAAGGAGGGCAAGCTTTTCTAGAGACATTGCTGCCACGGTTGAACCCCAAGAACAACAATGGAGGGCCATCAATGCCATTTGAACTTGAGGTTGTTGAAGCAGCATTGCTTTCAAGAATACAACGTTTGGAGCGGAGAATGATGGACTTAGAACCTCGTGTTCAAGCTCTTCTTGAGGCCTTGCCAAATCGGATAACCGGTGACATATTGGAGGAACTTCGTATTAGCAAACAAACTTTGGTTGAGTTAGGTTCTAGGGCAGGAGCTCTCAGACAGATGCTGCTTGACCTTCTGGAGGACCCTCATGAAATACGCCGGATATGTATCATGGGAAGAAACTGCACACTTAATAAAGGAACCAATAATATGGAATGTTCATTGCCCTTAGAAAAGCAGATTGCTGAGGAGGAGGAGGAGGAAATTGAGATGCTTCTGGAAAATTATCTACAAAGATGTGAATCTTGTCATGGTCAAGCTGAAAGGCTTCTTGATTCTGCAAGGGAAATGGAAGATTCTATAGCTGTCAGTTTGAGCTCACGAAGGCTTGAGGTTAGCAGAGTGGAACTGCTTCTCCAGGTTGGAACATTCTGTGTGGCAGTTGGTGCCCTCGTTGCAGGTATATTTGGCATGAACCTGAAGTCCTATCTTGAGGAACATGTGTTTGCATTTTGGCTGACAACAGCTGGGATAATTATTGGTGGCGTTGTTGTTTTTTTTCTAATGTATTCCTACCTCAGGGCAAGGAAAATATTTTGA 1377 0.4582 MALTWPHLLHFRSQPLLARTNYVFFSDLTEFRSVEPPCLDSLTLLRRNKISVPSLPALKPVKCIGRSTEEKQWSDAETAVSDSEEAGDDANGQAPSRTSVPANDRVESQRIATTSSGDSISLGIREPVYEVVEVRSNGTVSTRKINRRQLLKSSGLRPRDIRSVDPSLFLTNSMPSLLVREYALLLNLGSLRAIAMQDCVLIFDYNRKGGQAFLETLLPRLNPKNNNGGPSMPFELEVVEAALLSRIQRLERRMMDLEPRVQALLEALPNRITGDILEELRISKQTLVELGSRAGALRQMLLDLLEDPHEIRRICIMGRNCTLNKGTNNMECSLPLEKQIAEEEEEEIEMLLENYLQRCESCHGQAERLLDSAREMEDSIAVSLSSRRLEVSRVELLLQVGTFCVAVGALVAGIFGMNLKSYLEEHVFAFWLTTAGIIIGGVVVFFLMYSYLRARKIF. 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09121 458 CDD Mrs2_Mfm1p-like 131 457 IPR039204 -
Seca3g09121 458 Coils Coil 338 358 - -
Seca3g09121 458 FunFam Magnesium transporter MRS2-11, chloroplastic 124 205 - -
Seca3g09121 458 Pfam CorA-like Mg2+ transporter protein 238 447 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Seca3g09121 458 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 93 457 IPR039204 -
Seca3g09121 458 MobiDBLite consensus disorder prediction 92 114 - -
Seca3g09121 458 MobiDBLite consensus disorder prediction 69 114 - -
Seca3g09121 458 Gene3D - 124 205 - -
Seca3g09121 458 Gene3D Magnesium transport protein CorA, transmembrane region 206 389 - -
Seca3g09121 458 FunFam Magnesium transporter MRS2-11, chloroplastic 207 389 - -
Seca3g09121 458 Coils Coil 247 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09121 Seca-Chr3 229824492 229832096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09121 122 458 MRS2 Gene Family AT5G22830 84.273 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09121 K16075 - gmx:100808371 754.977