Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09119 ATGGCGGAGGACCGCAATGAGGCCAGTGATTTCAGTTCGGAGGACGAAGGCACTGAGGATTACAGGCGTGGAGGGTACCATGCGGTTCGGATTGGGGACACTTTCAAGAATGGGTGCTATGTGGTGCAAAGCAAGCTCGGTTGGGGTCATTTTTCCACCGTGTGGCTCGCTTGGGATACTCAGAAATCGCGATATGTTGCCTTGAAAATTCAAAAGAGTGCTCAGCACTACACTGAAGCAGCGTTGGATGAAATAAAGATTCTCAAACAAATTGCTGATGGGGATCCAGATGACAAGAAATGTGTTGTGAAGCTTTTGGATCACTTTAAGCATTCAGGGCCTAATGGCCAGCATGTTTGTATGGTTTTTGAATTCCTTGGTGATAACCTTCTCACCCTTATCAAGTACAGTGATTATCGAGGGGTTCCCCTTCCCATGGTCAAAGAAATTTGTTTCCATGTTTTGGTTGGTTTGGATTACCTGCATCGTGAGCTTTCTGTAATACACACTGATTTGAAGCCAGAGAATGTCTTGCTTCTGTCTCCAATAGATCCATCTAAGGATCCTAGAAAATCAGGTGTTCCACTTATCCTTCCAAACACCAAGGACAAGATTGTGGCCAAGAATGGGACAACAAAAGATGATAAAAGTTTGAATGGAGATCTGACCAAGAACCAGAAAAAGAAGATTCGAAAAAAGGCTAAAAAAGCTGCTCAGGGTTGTGTTGGGAAGGAAAATCCTGAGGAAGCAGAGGAGGATTCTAAAGCACCTGAGCAAGATGGTTGTAGTAATGATGTGAAACCAGTTGTAGAATCTGGTGGAGGTAAACCTAATAGTCCTGTGTGTAAAGATGAATCAACAAAGACACTTGAAACTAAGGATGTTCCACAAGGAAGTCATGGCCATAGGAGAGGTAGCCGCTCTACCAGAAAGAAGTTGCTTGCAGCTGTTGATCTTAAGTGCAAGCTGGTTGATTTCGGTAATGCTTGTTGGACATATAAACAGTTCACAAATGATATTCAGACAAGGCAGTATAGATGTCCTGAGGTTCTTCTTGGATCTAAATACTCAACTCCAGCAGATCTATGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACTGGTGATGTTCTTTTTGATCCTCATAGTGGGGACAACTATGATAGGGATGAGATTTTTACTCTTCAGGATCATCTTGCGTTGATGATGGAGCTTCTTGGAATGATGCCTCGCAAGATTGCACTTGGTGGTCGCTATTCCCGGGACTTTTTCAATAGATATGGTGATTTGAGGCACATTCGTCGGTTACGTTTCTGGCCTCTTAATAAGGTCCTGATGGAGAAATATGATTTCAGTGAGCAAGATGCAATTGACATGGCTGACTTTCTTGTTCCATTGCTTGATTTTGTCCCTGAAAAGAGGCCAACAGCTGCTCAGTGCCTTAATCATCCATGGATGAGTGCAGGTCCTCGGACTCGTGAACCCTCATTGACAAATCTGCAACCTGATGATGCTATTGACAGGGAAACGTCTGAAAAGATGAGGAGGGAAAAGGCTGAACAGGAGGCTGTGGAAGTTGGTATGGGGAATATCGCCATTGATGGAACTCCAAAGCCACTCAAAGATTTCCAGTCTACAAAGCCAACAGAATAG 1653 0.4392 MAEDRNEASDFSSEDEGTEDYRRGGYHAVRIGDTFKNGCYVVQSKLGWGHFSTVWLAWDTQKSRYVALKIQKSAQHYTEAALDEIKILKQIADGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGVPLPMVKEICFHVLVGLDYLHRELSVIHTDLKPENVLLLSPIDPSKDPRKSGVPLILPNTKDKIVAKNGTTKDDKSLNGDLTKNQKKKIRKKAKKAAQGCVGKENPEEAEEDSKAPEQDGCSNDVKPVVESGGGKPNSPVCKDESTKTLETKDVPQGSHGHRRGSRSTRKKLLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEIFTLQDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLMEKYDFSEQDAIDMADFLVPLLDFVPEKRPTAAQCLNHPWMSAGPRTREPSLTNLQPDDAIDRETSEKMRREKAEQEAVEVGMGNIAIDGTPKPLKDFQSTKPTE. 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09119 550 MobiDBLite consensus disorder prediction 1 20 - -
Seca3g09119 550 MobiDBLite consensus disorder prediction 505 523 - -
Seca3g09119 550 CDD STKc_SRPK 29 486 - -
Seca3g09119 550 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Seca3g09119 550 MobiDBLite consensus disorder prediction 286 301 - -
Seca3g09119 550 FunFam Serine/threonine-protein kinase SRPK-like protein 311 486 - -
Seca3g09119 550 ProSiteProfiles Protein kinase domain profile. 40 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09119 550 MobiDBLite consensus disorder prediction 205 309 - -
Seca3g09119 550 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Seca3g09119 550 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 10 510 - -
Seca3g09119 550 Pfam Protein kinase domain 318 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09119 550 Pfam Protein kinase domain 40 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09119 550 SUPERFAMILY Protein kinase-like (PK-like) 35 492 IPR011009 -
Seca3g09119 550 Gene3D Phosphorylase Kinase; domain 1 16 122 - -
Seca3g09119 550 MobiDBLite consensus disorder prediction 245 260 - -
Seca3g09119 550 FunFam CMGC/SRPK protein kinase 26 125 - -
Seca3g09119 550 SMART serkin_6 40 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09119 550 Gene3D Transferase(Phosphotransferase) domain 1 123 487 - -
Seca3g09119 550 MobiDBLite consensus disorder prediction 207 225 - -
Seca3g09119 550 MobiDBLite consensus disorder prediction 482 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09119 Seca-Chr3 229818832 229823755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09119 1 538 EF-hand Containing Proteins AT5G22840 68.132 0.0 744
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Seca3g09119 Pkinase 1.4e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09119 K08832 - gmx:100809984 978.393