Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09093 ATGGCCAAAGGCACTGATTCGGATGAGTTTGTGATGCTTTCTAGGGTCCGTACGGGTCTCAAGAGGGAGTTTGCATTCGCCATGAAGGCCCAATCAGAGATCGGTGGTGGTTCTTTAGGTCGAACCCGCGCTAGCAAGAACCGGAATGAGGTTCCGGTTCAGACCGCTCCGGCCAGAAAGAGGTCAAGGAAGTCCGCTTCTGTGGAGGAGGATGCGGCGGTGAAAAACGCAGAGGATGTGGCCGTGGTGAAAAACGCAGAGGATGTGGTGGGCGATGCCATGAGCGAGGAGGATGCTAAGAGTGATGTGGTGGATCTTGCGAGCGATGATGAACCCAAGAACAACCAAGAGGGAGAATCTGTTGCTGCAGTGCCTATTTGTGAAGAGGAACCAAAGAGTGATGTGGTGGTGGAAACTGTGATAAACGAAGAAGAACCTCGTGTAGTGGTTGAGTCTTTGAAGGAAGAAGAGGTTAATAATGATGAGATAGCGCAAAAGAAGGAAGAAGAGGTTAATGATGATGAAATAGCACAACCCCTTTGCGAAACTGGGGTCAACGAGGAGGATTTGCAGGAAACTGGGGTCAAAGAGGAGGATTTGCAGGAAACTAGAGTCAAAGAAGATTTGCAGGATATGGAGAAGGGTGCTGCTCCAGAGGAAAAAGGCTTGGAGAAGGGTTCTGCATCAGAGGAAAATGGTGGCACTAATGGGGCAGTCCCGGTTTTGGTTAGTGATAAAAAGCGGAAGAAAAAAATGCCCTTAGAGAAGCCAATGAGGCGGTTTACCAGGTCAGCATTGAAGGAAAAATCTGATGAAACAAAGGTAATAAATGATGGGGAACATACTAGTGCTGATATTGATGATAATGTTAAAATGGAAACTGAGGCTTCCCCATTAACAACCACTCCAACTCCATTGAAAACGCCCAAGAGTAGCTCGAAGAAGTTCCCTTCCAAGCTAAAGGATCTTCTAGCTACAGGGATTATTGAGGGACTGCCAGTGAAGTATGTTAGGGGAACGAAGGCACGGAAACCTGGAGATGCTGGGCTTCAAGGAGAGATTAGAGGCTCTGGGATTTTGTGCTATTGTGGGAGTTGTAAAGGGGTTGAGGTTGTCACGCCCACTGTGTTTGAGCTGCATGCTGGTAGTGCTAACAAACGTCCCCCAGAGTATACTTACCTTGAGAATGGAAATACCCTCCGAGATGTCATGAATGCCTGTTGGAGTTTGCCATTGGAGACCTTGGAGGAAGCCGTCCAAAAGGTCCTCGGTCACTTCACTATGAAGAAATCTACCATGTGTTTGAACTGCAGAGCATCTATGTCTGAAGATGGAAAGGGTGTGTCAAGACTAGTATGTGATTCATGCATGGAGTTAAAAGACTCTCAACCTAGCCCCCCTCAAACAGCTGTGGCAAGCAGTTGTGCCCCTCAAACAGCCATGGCAAGCAGTTGTGCCATTCAATCAACCATGGCAAACAGTTGTGCCCCCCAAACAGCCATGGCAAGCAGTTGTGTCCCTCAAACAGCCATGGCAAGCAGCTGTGCCCCTCAAACAGCAATGGCAAACTGTTCCTCCCCTCAAACAGCTGTGGCAAGCAGTAAAAGTGTTTTATCAGCATTTCCACCCAGATCACCAGAACCAGTTATGGTTCCAAAGTCATTAAACAATGGGATTAAGCACAGTGAGTCTCGTGGTAAGAGTCAGGGAAGATTAACTAGAAAGGATCTACGCTTGCATAAGTTGGTATTTGAAGAAGATGTGTTGCCTGATGGAACTGAAGTAGCCTACTATGCTCATGGAAAGAAATTGTTGGTTGGTTACAAAAAGGGATATGGAATTTTTTGTACCTGCTGCAACTCTGAGGTCAGTGCCTCTCAGTTTGAAGCTCATGCTGGCTGGGCATCCCGACGCAAGCCTTACTTGCACATATACACATCCAATGGAGTCTCCCTCCATGAGTTGTCTATCTCTTTATCGAAAGATCGGAGGTTTTCTACCACAGATAATGATGACCTTTGCAGCATATGTGAGGATGGAGGAGATCTTTTGTGTTGTGATGGATGCCCCAGAGCTTTTCACATAGATTGTGTTCCTCTACCATGCATTCCAAGTGGGACTTGGTATTGTAAATATTGCCAGAATCTTTTCCAGAAAGACAGACATGGGCAACATTATGTGAATGCTCTAGCAGCTGGAAGAATTGAAGGCACTGATCCTTTTGAACAGATAAACCAAAGATGTATTCGTGTTGTCAAAACTGTTGAAATTGACCATGGTGGATGTGCCTTGTGCAGATGTCATGATTTCAGTAAAATCTTTGGTCCCCGAACAGTAATTATTTGTGATCAGTGTGAGAAAGAATATCATGTTGGATGTTTGAAGGAGCATAACATGCAGAATCTAGAGAAACTGCCTGAAGGGAATTGGTTCTGCAGCACAAGTTGCAGTCAAATTCATGCTGCTCTGATTAATTTGGTGGCTTGTGGGGAGAAAAATCTTCCAGATTCTTTTCAAAGTTTGATTAAAAAGAAGCATGAAGAGAAAGGTTTAGAGACTGGGGTTGGTCTTGACATTAAATGGAGAGTCCTGAATTGGAAATTAGCTGCTTCTCCTGAAATTAGGCCGTTGCTTTCGAAGGCTGTTGCCATTTTCCATGAGAGGTTTGATCCTATAGTTGATTCTTCCTCTGGCCGTGATTTCATTCCAACAATGATATATGGAAGGAACATCCGGAGCCAAGATTTTGGTGGAATGTACTGTGCAGTGCTCACCGTCAACCAAGTTGTCGTGTGTGCTGCAATATTTCGTGTCTTTGGGGCCGAAGTAGCAGAGCTTCCGTTAGTGGCAACAACTGCTGATCACCAAGGACAGGGCTACTTTCAATGCTTGTTTTCATGCATTGAGAATCTACTTGGATCTTTAAACGTGAAAAACTTTGTCCTACCTGCTGCTGATGAAGCTGAATCAATATGGACTAGTAAATTTGGGTTTACAAAGCTAGGGCTGGAGGAGATCAACAATTATAAGAAATTTTATCACATGATGATATTTCAAGGGACCTCAGTACTGCATAAGCCCGTTCCTTCTGCTCCCTGA 3099 0.4524 MAKGTDSDEFVMLSRVRTGLKREFAFAMKAQSEIGGGSLGRTRASKNRNEVPVQTAPARKRSRKSASVEEDAAVKNAEDVAVVKNAEDVVGDAMSEEDAKSDVVDLASDDEPKNNQEGESVAAVPICEEEPKSDVVVETVINEEEPRVVVESLKEEEVNNDEIAQKKEEEVNDDEIAQPLCETGVNEEDLQETGVKEEDLQETRVKEDLQDMEKGAAPEEKGLEKGSASEENGGTNGAVPVLVSDKKRKKKMPLEKPMRRFTRSALKEKSDETKVINDGEHTSADIDDNVKMETEASPLTTTPTPLKTPKSSSKKFPSKLKDLLATGIIEGLPVKYVRGTKARKPGDAGLQGEIRGSGILCYCGSCKGVEVVTPTVFELHAGSANKRPPEYTYLENGNTLRDVMNACWSLPLETLEEAVQKVLGHFTMKKSTMCLNCRASMSEDGKGVSRLVCDSCMELKDSQPSPPQTAVASSCAPQTAMASSCAIQSTMANSCAPQTAMASSCVPQTAMASSCAPQTAMANCSSPQTAVASSKSVLSAFPPRSPEPVMVPKSLNNGIKHSESRGKSQGRLTRKDLRLHKLVFEEDVLPDGTEVAYYAHGKKLLVGYKKGYGIFCTCCNSEVSASQFEAHAGWASRRKPYLHIYTSNGVSLHELSISLSKDRRFSTTDNDDLCSICEDGGDLLCCDGCPRAFHIDCVPLPCIPSGTWYCKYCQNLFQKDRHGQHYVNALAAGRIEGTDPFEQINQRCIRVVKTVEIDHGGCALCRCHDFSKIFGPRTVIICDQCEKEYHVGCLKEHNMQNLEKLPEGNWFCSTSCSQIHAALINLVACGEKNLPDSFQSLIKKKHEEKGLETGVGLDIKWRVLNWKLAASPEIRPLLSKAVAIFHERFDPIVDSSSGRDFIPTMIYGRNIRSQDFGGMYCAVLTVNQVVVCAAIFRVFGAEVAELPLVATTADHQGQGYFQCLFSCIENLLGSLNVKNFVLPAADEAESIWTSKFGFTKLGLEEINNYKKFYHMMIFQGTSVLHKPVPSAP. 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09093 1032 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 917 1013 IPR016181 -
Seca3g09093 1032 Coils Coil 153 173 - -
Seca3g09093 1032 PANTHER AUTOIMMUNE REGULATOR 68 1028 - -
Seca3g09093 1032 SUPERFAMILY FYVE/PHD zinc finger 755 814 IPR011011 -
Seca3g09093 1032 MobiDBLite consensus disorder prediction 35 74 - -
Seca3g09093 1032 MobiDBLite consensus disorder prediction 160 252 - -
Seca3g09093 1032 MobiDBLite consensus disorder prediction 537 572 - -
Seca3g09093 1032 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 660 743 IPR013083 -
Seca3g09093 1032 MobiDBLite consensus disorder prediction 297 316 - -
Seca3g09093 1032 CDD PHD1_AIRE 673 713 - -
Seca3g09093 1032 MobiDBLite consensus disorder prediction 160 174 - -
Seca3g09093 1032 ProSitePatterns Zinc finger PHD-type signature. 674 713 IPR019786 -
Seca3g09093 1032 FunFam PHD finger family protein 858 1027 - -
Seca3g09093 1032 SMART PHD_3 764 817 IPR001965 -
Seca3g09093 1032 SMART PHD_3 673 714 IPR001965 -
Seca3g09093 1032 SUPERFAMILY FYVE/PHD zinc finger 661 715 IPR011011 -
Seca3g09093 1032 MobiDBLite consensus disorder prediction 196 227 - -
Seca3g09093 1032 MobiDBLite consensus disorder prediction 297 313 - -
Seca3g09093 1032 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 757 819 IPR013083 -
Seca3g09093 1032 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 660 737 - -
Seca3g09093 1032 Pfam PHD-finger 674 715 IPR019787 -
Seca3g09093 1032 Gene3D - 859 1026 - -
Seca3g09093 1032 ProSiteProfiles Zinc finger PHD-type profile. 671 716 IPR019787 -
Seca3g09093 1032 Pfam Tify domain binding domain 607 655 IPR032308 -
Seca3g09093 1032 Pfam Tify domain binding domain 352 407 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09093 Seca-Chr3 229385154 229392722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09093 317 1030 PHD Transcription Factor Family AT2G36720 47.018 0.0 652
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca3g09093 TDBD 2.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09093 - - pcin:129313514 1264.98