Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09089 ATGATTTCAAGGACCACACATGGTTTTCCAAATCAAGGGCTGCAGATGTTTCCTGATACAGAAGATTTGTTATCACCCTCTGTTGAAGTAATCTCTGGCTCAGGTTCACCCTCTAGTTCCCTCCTCTTCAATCTCTCTGTTTTGAAAGACAAGGTTAATCAGGTGCAAGCCCTTGTGGGTGTTATTCTCTCCCCAAATCAAAGCCTACCTGAGTCAACTTCCATGGCTATATCCAGCATGAATTCCACAATCCAAGAAATCATAGTGACTGCTACATCAATGATGTTCACATGTCAACACATGGCTCTCAGTTTCCCTTCTTCAGGTACAAATACTACTACTTGCACCAATGAATTGCACCACCAGCAACAATCTAATCATGACAAGTTATTGCCTCATACAAATAGGGGTGTGGTTAGTAACATAGGCTCAGAGACAGATGTTAGAGGCCAGACTTTGTTTTCTAATACTGAGTCAGAGGCACTAGATTGGTTTGGTGAAAGCTATAATAATAATAGCAATATTAACTTTAAGCTTAAGGATGATGATGATCAAAATGTTGCAATTAATGGTAAGGGGGATGAGCCTAATGAAGACTATAGAGGAATTTCACCAAAGAATAATGATGATGATGATGATGAAGAAGATGGTGGTATAATTGAATTGGATGCTGCTGATTTGTTGGCTAAGTACACACATTATTGCCAAGTTTGTGGCAAAGGGTTTAAGAGAGATGCAAATTTGAGGATGCATATGAGAGCTCATGGGGATGAGTATAAGACCAATGCTGCTTTGAGTAACCCAATTAAGAAAAAGGGAAGCTTATTGGGTGGGGGAAGGGAGTGTTTGATGAATATGAAGCCTAAGAAATACTCATGTCCTCAACAAGGATGTAGGTGGAACCAAAAGCATGCCAAGTTCCAGCCTTTGAAATCCATGATTTGTGCTAAGAATCATTACAAGAGAAGCCATTGCCCCAAAATGTATGTGTGCAAGAGGTGCAACCAGAAGCAATTCTCAGTGCTTTCTGATCTGAGGACCCATGAGAAGCATTGTGGAGATCTCAAGTGGCAGTGTTCCTGTGGCACTACCTTCTCTAGGAAAGACAAGCTTATGGGTCATGTTTCTTTGTTCATTGGCCACCACCCAGCTATCAATGCATGA 1164 0.4107 MISRTTHGFPNQGLQMFPDTEDLLSPSVEVISGSGSPSSSLLFNLSVLKDKVNQVQALVGVILSPNQSLPESTSMAISSMNSTIQEIIVTATSMMFTCQHMALSFPSSGTNTTTCTNELHHQQQSNHDKLLPHTNRGVVSNIGSETDVRGQTLFSNTESEALDWFGESYNNNSNINFKLKDDDDQNVAINGKGDEPNEDYRGISPKNNDDDDDEEDGGIIELDAADLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTNAALSNPIKKKGSLLGGGRECLMNMKPKKYSCPQQGCRWNQKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVSLFIGHHPAINA. 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09089 387 Gene3D Classic Zinc Finger 228 276 - -
Seca3g09089 387 SMART c2h2final6 233 255 IPR013087 -
Seca3g09089 387 SMART c2h2final6 291 324 IPR013087 -
Seca3g09089 387 SMART c2h2final6 329 351 IPR013087 -
Seca3g09089 387 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 37 385 IPR044300 GO:0010044|GO:0010447
Seca3g09089 387 ProSiteProfiles Zinc finger C2H2 type domain profile. 233 260 IPR013087 -
Seca3g09089 387 MobiDBLite consensus disorder prediction 182 217 - -
Seca3g09089 387 Gene3D Classic Zinc Finger 327 377 - -
Seca3g09089 387 MobiDBLite consensus disorder prediction 182 208 - -
Seca3g09089 387 FunFam Zinc finger protein 574 232 257 - -
Seca3g09089 387 ProSitePatterns Zinc finger C2H2 type domain signature. 235 255 IPR013087 -
Seca3g09089 387 SUPERFAMILY beta-beta-alpha zinc fingers 231 258 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09089 Seca-Chr3 229342466 229344631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09089 38 384 C2H2 Transcription Factor Family AT5G22890 49.304 1.36e-107 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g09089 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09089 - - gsj:114375424 513.072