Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09088 ATGGATCATATGGAAGGCATAGTGATGGAAGAACATGCTGTTAACGATGCCAACTGCATCATCAAAGGGAAGCGCACTAAGCGAAGGTTGAGGCCTTTGTCTCCTTGTGCTGTAACCGCCGCGGCAACTGCCATGGCTTCCAGCTGCTCCAGCGCGTCCGGAAATGGCGGAGGAGGTGACTGCGGGTCGTTTTCAACTAACAGCTTTGAAGGCGCTGACCAGGAAGAGGAAGACATGGCTAACTGCTTGATTCTCTTAGCACAAGGGAAAAGAGGAAGAGATTCTCACAACCACCAACAACAACACAAACAGCAAGATGAAACTAAAACTGAAACTGAAACTGCAACTGAAAATGAAAATCATGTGGATGGCAATAAGATCGTGTCAGAGAGGGCTAACAAAATTGGTTTATATATTTATGAGTGCAAAACCTGTAACAGAACATTTCCTTCTTTTCAAGCGTTAGGTGGACACAGAGCCAGTCACAAGAAGCCTAAGATGATGATGATTACTCCTCAAGAGGAAAAAAAATCACCACCATCACCAGCATCGCCACTAATCATGAAAAGTGAATTTGAAGAAGCAAAGCAAAACCATATCAAGGTTATTAATCCTCCTGTTTCGCTTGAATTAGGGTGTGGTATTAATGGTAACGGTAACAAATCCAAGTCCAAGATTCACGAGTGTTCTATTTGCGGTTCAGAATTCACATCTGGCCAAGCATTGGGTGGTCACATGAGGAGGCATAGAGCATCTACAATTAACATTAACAACGCTGCTGATGTGAAGCCTCGGAATGTTCTAGAATTGGATCTCAATCTTCCGGCGCCGGAGGAAGATCTCCGGGAGTCCAAGTTTCAGTTTCCGGCGAACCAGAAATCGTTGGTGCTGTCTCCGGCTTTGATGATGGGTTGCCATTATTAG 924 0.4491 MDHMEGIVMEEHAVNDANCIIKGKRTKRRLRPLSPCAVTAAATAMASSCSSASGNGGGGDCGSFSTNSFEGADQEEEDMANCLILLAQGKRGRDSHNHQQQHKQQDETKTETETATENENHVDGNKIVSERANKIGLYIYECKTCNRTFPSFQALGGHRASHKKPKMMMITPQEEKKSPPSPASPLIMKSEFEEAKQNHIKVINPPVSLELGCGINGNGNKSKSKIHECSICGSEFTSGQALGGHMRRHRASTININNAADVKPRNVLELDLNLPAPEEDLRESKFQFPANQKSLVLSPALMMGCHY. 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09088 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 140 167 IPR013087 -
Seca3g09088 307 ProSitePatterns Zinc finger C2H2 type domain signature. 142 162 IPR013087 -
Seca3g09088 307 Gene3D Classic Zinc Finger 137 249 - -
Seca3g09088 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 227 254 IPR013087 -
Seca3g09088 307 Pfam C2H2-type zinc finger 140 165 - -
Seca3g09088 307 Pfam C2H2-type zinc finger 227 251 - -
Seca3g09088 307 SUPERFAMILY beta-beta-alpha zinc fingers 139 249 IPR036236 -
Seca3g09088 307 SMART c2h2final6 227 249 IPR013087 -
Seca3g09088 307 SMART c2h2final6 140 162 IPR013087 -
Seca3g09088 307 MobiDBLite consensus disorder prediction 91 121 - -
Seca3g09088 307 ProSitePatterns Zinc finger C2H2 type domain signature. 229 249 IPR013087 -
Seca3g09088 307 PANTHER ZINC FINGER PROTEIN ZAT5 68 292 - -
Seca3g09088 307 MobiDBLite consensus disorder prediction 90 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09088 Seca-Chr3 229295052 229296002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09088 15 307 C2H2 Transcription Factor Family AT2G28200 40.896 3.25e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g09088 zf-C2H2_6 2.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09088 - - gmx:100788646 275.789