Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09086 ATGGATGTTCACCAAGACACATTTGGGTACATCAATGATTTTGAGCTGCACGATTTCATTGACGATCCCAACTTTGATCAGTTTATCAATTTGATTCGAGGGGAGAATGAGGATGCCATTTGTAACTTTGGTTCTGACCTTATCAATGATTGCTTCGTTGATAACAACCAGCTCCTTTCATGTCCTCAAAACAACCCATTTGAACAGAACAATAATAATGCTGTGAATGTCTATGATCCAAGCTCTACATTTAGCTCCTTCTCTTGTTTTGATGGGGAGGTCAAGGGAGATGGAGAAGGAGAAGAAGAAAATGATGGAGAGGATTCTTCAACAACGACCAAGGCAACTGATAGGTCCAAACAGAGGGTAAAAACTGATAGGTCCAAAACTCTCATTTGTGAGAGGAGGAGGAGAGGCCGAATGAAGGAGAAGCTTTATGCGTTGCGTTCTTTGGTTCCCAACATAACTAAGGTACGTTTCCCTGTTTCAATTAGATTGGTTAAGATGGATAAGGCCTCTATAATTGGAGATGCAGTATCATACGTGCATGACCTTCAAGCACAAGCTAAGAAGCTGAAGGCTGAGGTTGCAGGACTTGAAGCTTCCTTATTAGTGTCCGAAAATTATCAAGGATCAATTAACAACCTTATTAATGTTCAAGCCACCCATAACAGCCGTCCAATCTGCAAGAAAATTATGCAGGTGGACATGTTTCAAGTGGAGGAAAGAGGGTACTATGCAAAGATAGTATGCAATAAAGGAGAAGGGGTGGCTGCCTCGCTCTACAGGGCTCTTGAGTCTCTTGCAGGTTTCAATGTTCAAAATTCAAATTTGGCAACAGTTTCTGACAATTTTATACTTACATTTACATTGAATGTAAAGGGTTCTGAACCAGAAATTAACCTTCCAAATTTGAAGCTATGGGTGACTGGCGCTCTTCTGAACCAAGGATTTGAATTCATGCCATCCTTTCATGCTTGA 981 0.4088 MDVHQDTFGYINDFELHDFIDDPNFDQFINLIRGENEDAICNFGSDLINDCFVDNNQLLSCPQNNPFEQNNNNAVNVYDPSSTFSSFSCFDGEVKGDGEGEEENDGEDSSTTTKATDRSKQRVKTDRSKTLICERRRRGRMKEKLYALRSLVPNITKVRFPVSIRLVKMDKASIIGDAVSYVHDLQAQAKKLKAEVAGLEASLLVSENYQGSINNLINVQATHNSRPICKKIMQVDMFQVEERGYYAKIVCNKGEGVAASLYRALESLAGFNVQNSNLATVSDNFILTFTLNVKGSEPEINLPNLKLWVTGALLNQGFEFMPSFHA. 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09086 326 MobiDBLite consensus disorder prediction 95 127 - -
Seca3g09086 326 Pfam Helix-loop-helix DNA-binding domain 132 186 IPR011598 GO:0046983
Seca3g09086 326 MobiDBLite consensus disorder prediction 107 127 - -
Seca3g09086 326 Coils Coil 182 202 - -
Seca3g09086 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 201 IPR036638 GO:0046983
Seca3g09086 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 185 IPR011598 GO:0046983
Seca3g09086 326 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 12 316 - -
Seca3g09086 326 SMART finulus 131 191 IPR011598 GO:0046983
Seca3g09086 326 Gene3D - 115 202 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09086 Seca-Chr3 229263922 229266056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09086 11 318 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 53.106 1.20e-102 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g09086 HLH 4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09086 K26214 - gmx:100805451 449.514