Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09072 ATGGGAAGAGCTCCTTGCTGTGACAAAGCAAATGTGAAGAAAGGACCATGGTCACCAGAAGAAGACTCAAAGCTGAAGGAGTATATAGAGAAGCATGGAACTGGAGGGAATTGGATTGCTCTTCCTCAGAAAGCTGGTCTAAAGAGATGTGGAAAAAGTTGCAGATTGAGATGGCTTAACTATCTAAGGCCAAACATTAAGCATGGAGAGTTCTCTGATGAGGAAGACAGAATAATTTGCAGCCTTTATGCTAATATTGGAAGCAGATGGTCTATTATAGCTGCTCAGTTACCAGGTAGAACTGACAATGATATCAAGAACTACTGGAACACTAAACTAAAGAAGAAGCTCATGGGGTTGTTTCCTGAATCTAATCAGAGAAAACTAACTTATCAATCTTCTCCTCATGATCATCAAAACCCAACATTTCCTTCTCATCAATACAGAGACTATTACTACTGCAGTTCCTCTTACTACAGCCCAGCAGCAACAACCATATCTCTCACAGGCTTTGAACCAATTTCTGTTATTTCTTCAAGTAGTTACACAAGCACATGCTGCACAACAACCTCAACTACCTCTCTCCCTTTTTACCATAACCAAGGAGAGTCCTTGGTTAGTAGTACTGTTAGTCCTCCCATGCAATATTACCCTATCACAGAGACTAGTCTTCTCATGTTTGGAAGTGAAGGAAGCTGTAGTTCATCTGATGGAAGCTGTAGTCAGGTTAGCCATGGGAAGGAGATCAAACAAGAAGAAATAATGGGTTATCAGAATTGTTTCATGTTTGGTCACAACAGCAGCAACATTAATAATAATGATTATGTTAATCAATGGGCAGAGGAAAAGGGAAATGGGTGCTATTTTCAGAGGCAAAATCAAATGGATTATGATCTTGAGGTGATTAAGCAACTGATAAGTAGCAGTAATAGTAATAATGGGTACTTGAGTGTTGATGAAAACAAGACGGAGGAGAAGGGCATGTACTACCACTACTACTACTGA 1005 0.398 MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICSLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMGLFPESNQRKLTYQSSPHDHQNPTFPSHQYRDYYYCSSSYYSPAATTISLTGFEPISVISSSSYTSTCCTTTSTTSLPFYHNQGESLVSSTVSPPMQYYPITETSLLMFGSEGSCSSSDGSCSQVSHGKEIKQEEIMGYQNCFMFGHNSSNINNNDYVNQWAEEKGNGCYFQRQNQMDYDLEVIKQLISSSNSNNGYLSVDENKTEEKGMYYHYYY. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09072 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Seca3g09072 334 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Seca3g09072 334 Gene3D - 7 68 - -
Seca3g09072 334 PANTHER OS09G0431300 PROTEIN 1 294 - -
Seca3g09072 334 FunFam Transcription factor RAX3 7 68 - -
Seca3g09072 334 CDD SANT 16 62 IPR001005 -
Seca3g09072 334 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Seca3g09072 334 FunFam Transcription factor MYB36 70 139 - -
Seca3g09072 334 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Seca3g09072 334 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Seca3g09072 334 Gene3D - 69 142 - -
Seca3g09072 334 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Seca3g09072 334 CDD SANT 70 113 IPR001005 -
Seca3g09072 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Seca3g09072 334 SMART sant 13 64 IPR001005 -
Seca3g09072 334 SMART sant 67 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09072 Seca-Chr3 228975931 228977841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09072 1 137 MYB Transcription Factor Family AT5G57620 81.752 7.90e-79 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g09072 Myb_DNA-binding 1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09072 K09422 - gmx:100796382 415.231