Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09071 ATGCAGAGATCTGGCTATTGCAAGGATGGAATATACAGGTCTCTCAGACCTTCTCTCGTGGTACCCAACGACCCTAACCTCTCCCTCGTTTCACACCTCTTCTCAAGAGTCTCTTCCTTTCCCACCAAATCCGCCCTCATCGATGCTGATTCCTCCCAAACCCTCTCCTTCGCTCAGTTAAAGTCCCTCGTCCTTAAGCTCTCTCACGGCCTCCATCGCCTCGGAATCACCAAAAACGACGTCGTTCTATTCCTCGCACCAAACAGCATTCGTTACCCCATTTGCTTCCTCGCCGTCGTTTCCCTCGGTGCCGTCGTCTCCACCGTCAACCCATCCTACACCGTCACCGAAGTTTCCAAACAAGCCAAGGACTCCAACCCTAAACTCATCATCACCGTCGCTGAATTATGGGACAAGGTCAAGCACTTCAACCTCCCTGCAGTTTTCCTGGATTCCACCGCCGTGCCGTCGGATTCAAAGGTCACGAGTTTCGACGCGTTGGTCGAACTCGGTGGGTCGCCGACCGAGTTTCCGACGAGAAACGTGAAACAGAGTGATACGGCGGCGCTTTTGTACTCCTCCGGCACGACGGGTGTGAGCAAGGGTGTGGTTCTCACGCATGGGAATTTCATCTCTGCTTCTGTGATGATTGGAATGGACGATGAATTAGCGGGGCAGATGCACGACGTGTTCCTCTGCGTTTTGCCTATGTTTCATGTGTTTGGGCTTGCGGTTATTATCTACGCTCAGCTTCAGAGGGGAAACGCGGTGGTTTCTCTGAAGAGGTTTGAGTTTGAGGTGGTTTTGAAGACGATTGAGAAGTATAGGGTGACGCATTTGTGGGTGGTGCCTCCTATTATACTTGCTCTGGCTAAACATGCTTTGGTTGATAAGTATGATCTTTCTTCGTTGAAGCATATTGGTTCTGGTGCTGCCCCTCTTGGGAAAGAATTGATGGTGGAGTGTGCCAGACGTTTCCCTCATGCCACCATTTGTCAGGGCTATGGTATGACTGAAACTTGTGGGATTGTTTCTGTGGAGAATTCAAGGATGGGGATTCGGCATACTGGTTCAACAGGAATGCTTGTCGCTGGAGTGGAGGCTCAAATAGTTAGTGTTGATACACTGAAGCCCCTCCCTCCTGGACAGCTGGGGGAGATATGGGTACGGGGTCCTAATATGATGCAAGGTTATCACAACAATCCACAGGCCACAAGATTGACTATAGATAAAAAGGGGTGGGTACATACGGGAGATCTTGGATATATTGATGAGGATGGGCAACTTTTTGTTGTTGACCGTATTAAAGAACTGATCAAGTATAAAGGTTTTCAGGTTGCACCAGCAGAACTTGAAGGGCTTCTTGTTTCTCATCCTGAAATACTTGATGCTGTTGTTATCCCATATCCTGATGCTGAAGCTGGTGAGGTTCCAGTTGCCTATGTTGTTCGTTCACCCAATAGTTCACTAACTGAGGAAGATGTTCAAAAGTTTATTGCTAATCAGGTAGCACCTTTCAAAAGATTGCGGAGAGTGACATTCATCAACACTGTTCCTAAGACAGCATCAGGAAAAATTCTCCGAAGAGAGCTTATTGAAAAATCACGATCCAAACTATAA 1620 0.4809 MQRSGYCKDGIYRSLRPSLVVPNDPNLSLVSHLFSRVSSFPTKSALIDADSSQTLSFAQLKSLVLKLSHGLHRLGITKNDVVLFLAPNSIRYPICFLAVVSLGAVVSTVNPSYTVTEVSKQAKDSNPKLIITVAELWDKVKHFNLPAVFLDSTAVPSDSKVTSFDALVELGGSPTEFPTRNVKQSDTAALLYSSGTTGVSKGVVLTHGNFISASVMIGMDDELAGQMHDVFLCVLPMFHVFGLAVIIYAQLQRGNAVVSLKRFEFEVVLKTIEKYRVTHLWVVPPIILALAKHALVDKYDLSSLKHIGSGAAPLGKELMVECARRFPHATICQGYGMTETCGIVSVENSRMGIRHTGSTGMLVAGVEAQIVSVDTLKPLPPGQLGEIWVRGPNMMQGYHNNPQATRLTIDKKGWVHTGDLGYIDEDGQLFVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVIPYPDAEAGEVPVAYVVRSPNSSLTEEDVQKFIANQVAPFKRLRRVTFINTVPKTASGKILRRELIEKSRSKL. 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09071 539 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Seca3g09071 539 Gene3D - 9 436 IPR042099 -
Seca3g09071 539 SUPERFAMILY Acetyl-CoA synthetase-like 19 535 - -
Seca3g09071 539 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 436 - -
Seca3g09071 539 CDD 4CL 21 531 - -
Seca3g09071 539 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 534 - -
Seca3g09071 539 Pfam AMP-binding enzyme 36 441 IPR000873 -
Seca3g09071 539 Pfam AMP-binding enzyme C-terminal domain 450 525 IPR025110 -
Seca3g09071 539 Gene3D - 437 538 IPR045851 -
Seca3g09071 539 FunFam 4-coumarate--CoA ligase 2 437 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09071 Seca-Chr3 228943594 228948165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09071 1 539 Monolignol Biosynthesis Gene Families AT4G05160 69.485 0.0 803
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09071 K01904 - gmx:100797843 900.197