Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09069 ATGAAGGCATACAAGGCTATGGACAAAGAGCTCAGGTCTCATCCAAATCTGGATTGCTTCTGTAGCGGGAGCACAACTGTGTCAATAGTGAAGCAGGGTTCAAACTTGTTCATGGGCAATATTGGGGATTCTCGAGCAATCATGGGATCCAAGGACAGCAATGACGCCATGGTGGCAGTTCAATTGACTGTTGATTTGACGCATGATTTTCCAATTCTTATAGGAGAAGCAAAAAGAATTAAGCATTGCAAGGGTAGGGTATTTGCACTGCAAGATGAGCCAGAAGTGCCTAGGGTATGGTTGCCTTTTGATGATGCTCCAGGATTAGCAATGGCTAGAGCATTTGGAGATTTTTGCTTGAAGGAGTATGGTGTGATTTCTACACCTGAATTTTCTCACCGACTGCTTACAGACAGAGATCAATTCATTGTTCTTGCCTCAGATGGGGTAAGAATTTTCATTCTCATATCTATTTCTTCAGTTTGTTTAATTTTGCTTTGCTATTTTGGGAATTGA 516 0.4167 MKAYKAMDKELRSHPNLDCFCSGSTTVSIVKQGSNLFMGNIGDSRAIMGSKDSNDAMVAVQLTVDLTHDFPILIGEAKRIKHCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISTPEFSHRLLTDRDQFIVLASDGVRIFILISISSVCLILLCYFGN. 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09069 171 SUPERFAMILY PP2C-like 2 150 IPR036457 -
Seca3g09069 171 PANTHER PROTEIN PHOSPHATASE 2 150 IPR015655 GO:0004722|GO:0006470
Seca3g09069 171 Gene3D - 1 155 IPR036457 -
Seca3g09069 171 ProSiteProfiles PPM-type phosphatase domain profile. 1 171 IPR001932 -
Seca3g09069 171 CDD PP2Cc 2 150 IPR001932 -
Seca3g09069 171 SMART PP2C_4 4 164 IPR001932 -
Seca3g09069 171 Pfam Protein phosphatase 2C 3 150 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09069 Seca-Chr3 228926145 228926819 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09069 1 150 PP2C-type Phosphatase Gene Family AT1G03590 82.000 1.84e-87 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09069 - - thj:104801182 267.314