Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09055 ATGTCACACCAAGGCGAATCATCGGACTCGAAATCGGGGAAGAAGGACTACTCCACCGCGATTCTTGAGCGGAAAAAATCGCCGAACAGGCTCGTCGTCGATGAGGCCGTCAACGACGACAACTCCGTCGTCTCCATGCACCCCGAAACCATGGAAAAGCTTCAGCTTTTCCGAGGGGACACTATCCTCATCAAGGGCAAGAAACGGAGGGATACTATTTGTATAGCTCTTGCTGATGATACCTGTGAGGAGCCCAAGATCAGGATGAACAAAGTTGTGAGATCAAATTTGCGGGTTCGGCTTGGAGATGTTGTGTCTGTGCACCAGTGCCCGGATGTTAAGTATGGGAAACGTGTGCACATCCTGCCTATTGATGATACCATTGAAGGTGTCACTGGCAATCTGTTTGATGCTTTCTTGAAACCTTATTTCTTGGAGGCTTATCGTCCTGTCAGAAAAGGAGATCTATTTCTTGTCCGAGGTGGGATGAGAAGTGTAGAGTTCAAGGTCATTGAAACTGATCCTGGAGAGTATTGTGTGGTTGCTCCAGACACTGAAATCTTCTGTGAGGGGGAACCTTTGAAAAGAGAGGATGAAGAAAGGCTGGATGAAGTTGGGTATGATGATGTGGGTGGTGTCAGGAAGCAAATGGCACAGATTCGTGAATTGGTTGAGCTTCCGTTGAGACATCCACAACTTTTTAAATCAATTGGTGTGAAACCACCCAAAGGAATTTTACTATATGGACCCCCGGGTTCTGGGAAGACATTAATAGCAAGGGCTGTTGCTAATGAAACTGGAGCTTTCTTCTTTTGTATTAACGGACCAGAGATTATGTCCAAACTGGCTGGAGAGAGTGAAAGCAATCTCAGGAAAGCATTTGAAGAGGCTGAAAAGAATGCACCATCTATCATCTTTATTGATGAAATTGATTCTATTGCACCCAAGCGGGAGAAGACACATGGTGAAGTTGAAAGGAGAATTGTTTCACAACTTTTGACTCTTATGGATGGATTAAAATCTCGGGCCCATGTTATTGTTATTGGAGCTACTAATCGTCCGAATAGCATTGACCCAGCATTGAGAAGGTTTGGTAGATTTGATAGGGAAATTGATATTGGTGTTCCTGATGAAGTTGGGCGACTAGAAGTCCTTCGCATACACACCAAAAACATGAAGCTCTCTGATGATGTTGATTTGGAGAGAATTGCAAAAGATACTCATGGGTATGTTGGTGCTGATCTTGCTGCCCTTTGCACTGAAGCTGCTTTGCAATGCATTAGGGAGAAGATGGATGTCATTGACTTAGAGGATGAGACCATTGATGCTGAAATACTGAATTCTATGGCAGTTACAAATGAGCATTTCCAGACTGCACTTGGAACAAGCAACCCATCAGCTTTACGTGAAACTGTTAGTATATTTTACGTTGTTGAGGTGCCTAATGTCAGTTGGGATGACATTGGAGGCCTTGAGAATGTCAAACGTGAACTGCAAGAGACTGTTCAATATCCTGTTGAGCACCCAGAAAAGTTTGAGAAATTTGGCATGTCACCATCAAAAGGAGTCCTCTTCTATGGTCCTCCAGGATGTGGGAAAACTTTGTTAGCCAAAGCAATTGCTAATGAATGTCAAGCTAACTTCATCAGTGTGAAAGGCCCAGAATTGCTTACAATGTGGTTTGGTGAAAGTGAAGCCAATGTTCGAGAAATTTTTGACAAGGCTAGACAATCAGCTCCATGTGTCCTCTTCTTTGATGAGCTTGACTCCATTGCTACTCAGAGAGGAAGCAGCGTTGGGGATGCTGGTGGTGCTGCAGACAGAGTTTTAAATCAACTTCTGACTGAAATGGATGGCATGTCTGCCAAAAAGACCGTGTTCATAATTGGGGCAACTAACAGGCCTGACATCATTGATCCAGCACTTCTTCGCCCAGGCCGTCTGGATCAATTGATCTATATTCCTCTTCCTGATGAGGATTCCCGTCATCAAATCTTTAAGGCCTGCTTGAGGAAGTCACCTATCTCAAAAGATGTTGATTTGAGAGCATTGGCTAGGTATACTCAAGGGTTCAGTGGTGCTGATATTACAGAAATATGTCAGCGAGCATGCAAATATGCTATAAGAGAAAACATAGAAAAGGACATAGAGCGGGAGAGGAGGAGAAGGGAAAACCCTGAGGCCATGGATGAAGACGTTGTTGACGAAGAAGTTGCAGAGATCAAGGCAGCTCATTTTGAGGAGTCAATGAAGTTTGCGCGTAGGAGTGTTAGTGATGCTGATATACGCAAATATCAGGCATTTGCTCAGACCTTACAGCAATCCAGGGGGTTTGGAAGTGAATTTAGGTTTCCAGAGACTGGAGCTACGACTACTGGATCTGACCCCTTTGCAACTTCTGCTGGTGGAGCTGATGAAGATGATCTGTATAGTTAG 2436 0.4429 MSHQGESSDSKSGKKDYSTAILERKKSPNRLVVDEAVNDDNSVVSMHPETMEKLQLFRGDTILIKGKKRRDTICIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPLKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFQTALGTSNPSALRETVSIFYVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPISKDVDLRALARYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRENPEAMDEDVVDEEVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPETGATTTGSDPFATSAGGADEDDLYS. 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09055 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 770 IPR027417 -
Seca3g09055 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 470 IPR027417 -
Seca3g09055 811 Gene3D - 376 470 - -
Seca3g09055 811 SUPERFAMILY ADC-like 26 110 IPR009010 -
Seca3g09055 811 MobiDBLite consensus disorder prediction 8 23 - -
Seca3g09055 811 CDD RecA-like_CDC48_r2-like 494 654 - -
Seca3g09055 811 Gene3D - 113 209 - -
Seca3g09055 811 Gene3D - 210 374 IPR027417 -
Seca3g09055 811 Gene3D - 472 656 IPR027417 -
Seca3g09055 811 Pfam Cell division protein 48 (CDC48), domain 2 132 193 IPR004201 -
Seca3g09055 811 Pfam AAA+ lid domain 678 718 IPR041569 -
Seca3g09055 811 Pfam AAA+ lid domain 397 439 IPR041569 -
Seca3g09055 811 SUPERFAMILY Cdc48 domain 2-like 112 204 IPR029067 -
Seca3g09055 811 Pfam Cell division protein 48 (CDC48), N-terminal domain 30 111 IPR003338 -
Seca3g09055 811 FunFam Transitional endoplasmic reticulum ATPase 206 374 - -
Seca3g09055 811 MobiDBLite consensus disorder prediction 778 811 - -
Seca3g09055 811 ProSitePatterns AAA-protein family signature. 626 644 IPR003960 GO:0005524|GO:0016887
Seca3g09055 811 MobiDBLite consensus disorder prediction 1 23 - -
Seca3g09055 811 FunFam Cell division control 48 376 467 - -
Seca3g09055 811 ProSitePatterns AAA-protein family signature. 345 363 IPR003960 GO:0005524|GO:0016887
Seca3g09055 811 FunFam Cell division control 48 113 209 - -
Seca3g09055 811 CDD RecA-like_CDC48_r1-like 209 374 - -
Seca3g09055 811 SMART AAA_5 519 658 IPR003593 GO:0016887
Seca3g09055 811 SMART AAA_5 241 377 IPR003593 GO:0016887
Seca3g09055 811 SMART CDC48_N_2 30 113 IPR003338 -
Seca3g09055 811 NCBIfam CDC48 family AAA ATPase 31 773 IPR005938 GO:0016787
Seca3g09055 811 Gene3D - 7 112 - -
Seca3g09055 811 PANTHER AAA-FAMILY ATPASE 403 775 - -
Seca3g09055 811 SMART CDC48_2_2 130 196 IPR004201 -
Seca3g09055 811 FunFam Transitional endoplasmic reticulum ATPase 468 656 - -
Seca3g09055 811 FunFam Transitional endoplasmic reticulum ATPase 7 112 - -
Seca3g09055 811 Gene3D - 660 769 - -
Seca3g09055 811 Pfam ATPase family associated with various cellular activities (AAA) 523 656 IPR003959 GO:0005524|GO:0016887
Seca3g09055 811 Pfam ATPase family associated with various cellular activities (AAA) 245 374 IPR003959 GO:0005524|GO:0016887
Seca3g09055 811 MobiDBLite consensus disorder prediction 778 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09055 Seca-Chr3 228763106 228768866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09055 447 715 Calmodulin-binding Proteins AT3G56690 47.212 1.88e-77 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09055 K13525 - gmx:100783508 1515.36