Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09051 ATGGAGATGTTGGAGTTGATGGAAGATGGTAGAGGCGGAGGTGAAGCGGCTGCTGCGAACGGAGGTGGAGGTGAAAGAGTTGAACGAGGTGCCGGAGCTATGATCTTAAAGCCTTCTGATGATGTTTTAAAGGAGTTTGTTCTTGATATAGAAATCATCACTACCTTGCATCACAAAAACATTATTTCCCTACTGGGGTTCTGCTTTGAGGATAGCAATATTCTTTTGGTCTATGATTTCCTATCAAGAGGAAGCCTTGAAGAGAACCTTCATGGTAATAAGAAGAATTCACTTGTGTTTGGTTGGACTGAGAGATATAAGGTGGCAATGGGTGTTGCTGAGGCTTTGGAGTATCTTCATAATAATGATGGACAACCTGTGAGACAAGGCACATTTTTTAGGAGAAAACCAACAGGACAACATGAGCTCTCTGACTTTGGACTTGCTAAATGGGCATCAACCTCATTATCACACATAACGTGGACAAATGTTACTGGAACCTTTGGCTTTCTACCAGGTCCTTACATTGTTGTTGAGTCAAGAGGTGTTTTCACTGACAAGGAAAAAGTTGCTGCCCACTTGAAGCTTTTTTGA 594 0.4209 MEMLELMEDGRGGGEAAAANGGGGERVERGAGAMILKPSDDVLKEFVLDIEIITTLHHKNIISLLGFCFEDSNILLVYDFLSRGSLEENLHGNKKNSLVFGWTERYKVAMGVAEALEYLHNNDGQPVRQGTFFRRKPTGQHELSDFGLAKWASTSLSHITWTNVTGTFGFLPGPYIVVESRGVFTDKEKVAAHLKLF. 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09051 197 ProSiteProfiles Protein kinase domain profile. 1 197 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09051 197 Gene3D Transferase(Phosphotransferase) domain 1 26 193 - -
Seca3g09051 197 PANTHER OS08G0249100 PROTEIN 39 177 IPR046958 -
Seca3g09051 197 Pfam Protein tyrosine and serine/threonine kinase 42 122 IPR001245 GO:0004672|GO:0006468
Seca3g09051 197 SUPERFAMILY Protein kinase-like (PK-like) 39 172 IPR011009 -
Seca3g09051 197 SMART tyrkin_6 25 197 IPR020635 GO:0004713|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09051 Seca-Chr3 228706099 228710852 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09051 5 175 Receptor kinase-like Gene Family AT5G56890 34.054 3.53e-24 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca3g09051 PK_Tyr_Ser-Thr 5.6e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09051 - - lja:Lj1g3v0268780.1 219.55