Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09045 ATGTGCAAGACCAAAATGGCGATCAACGCCACAAATCCCACCTCAAGCCCTCGAACTCCACGCTCACAACCCACTACCCAGTCCCCAAGAACAACAGCAACCTCATCCACATCCAGACCCACACGTGCTGCCTCCCTCCCCGCCGTTCCTACCTCTTTCTCCGACCACCCTTCCTCCTCCTACGCCACCAGCAGCGGCTCCACCGGCTACAGACTCTCCTCTGACACCTCCATCGCAAGCCGTACATCCCTCACCTCCCTCCGCGAAACCCTCCCAGAAAACCCCAACATCTACGACTTCTCCGAAATCTGCTCCGCTACCAACAACTTCCTCTCCAAACGCTACTCTTCCTCCACCCCTTGCTGGCGCTGCATCCTCCGCGGCGCTGACGTCATTGTTTTCCAGCGCAAGTTCCGTCGTAAACTCGAAGTCTCCCAGCTCCGGGAACTTCTCTCCGTCATCTGCCGCAGCCACCACGTCAGCATCATAAAGCTCCTCGGCGCTTCTATCTCCGGCGATCACATCTACCTCGTCTACGAGTTCGTCAACGGAGCCAACCTCTCCAATTGTCTTCGAAACGCGAAGAACATTCACTTCACGGTTCTCTCCACTTGGATGTCGAGAATGCAGGTTGCTACCGATCTCGCTCACGGCCTCGACTACATTCACAACAAGACCGGATTGAACATAAACTTCGTCCACAACCACATCAAGAGCAGCGGCATCATCATCACTGAGCCTGATTTCAACGCTAGGGTTTGCCATTTCGGTGCCGCTCAGCTTTGCGGCGAAATCGAGCAACAAAACGAAATCTCCGGAAAAAAATTGGGGGAAATCGTGGAGGAATCGCCGCCGCCGACGAGATCCAAGGGCTCCAACATGCAATTCGAGGGCGTCCGGGGGTACATGTCGCCGGAATTTCAGGCTGCCGGCGTGGCGACGCAGAAGTCTGATGTGTATGCTTTCGGGGTGGTGATGCTAGAGCTTTTGTCAGGGGAGGAGCCGTTGAAGTTCAAGTTCGACGAGAAGACCCGCGATTTCGTGAAGATATCGGTGATCGAGACGGCGAGGGCCGCCGTGGACGCCGGCGATGGTAGCGTAGAAGGGAAGCTAAGAAAGTGGGTGGATAGGAGGCTGAAAGATTCGTTCCCTGTAGACGTCGCTGAGAAATTGACACGTGTAGCGTTGGATTGCGTACACGTGGATCCAGATAAGAGGCCCAACATGGGACGTGTCGCTGGCAAGATCTCCAAGCTTTATTTGGAGTCAAAGAATTGGTCAAGCAATATGAAGATGCCTGATTTTTCTGTTTCACTGGTTCCTCGATGA 1329 0.5455 MCKTKMAINATNPTSSPRTPRSQPTTQSPRTTATSSTSRPTRAASLPAVPTSFSDHPSSSYATSSGSTGYRLSSDTSIASRTSLTSLRETLPENPNIYDFSEICSATNNFLSKRYSSSTPCWRCILRGADVIVFQRKFRRKLEVSQLRELLSVICRSHHVSIIKLLGASISGDHIYLVYEFVNGANLSNCLRNAKNIHFTVLSTWMSRMQVATDLAHGLDYIHNKTGLNINFVHNHIKSSGIIITEPDFNARVCHFGAAQLCGEIEQQNEISGKKLGEIVEESPPPTRSKGSNMQFEGVRGYMSPEFQAAGVATQKSDVYAFGVVMLELLSGEEPLKFKFDEKTRDFVKISVIETARAAVDAGDGSVEGKLRKWVDRRLKDSFPVDVAEKLTRVALDCVHVDPDKRPNMGRVAGKISKLYLESKNWSSNMKMPDFSVSLVPR. 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09045 442 SUPERFAMILY Protein kinase-like (PK-like) 121 412 IPR011009 -
Seca3g09045 442 ProSiteProfiles Protein kinase domain profile. 57 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09045 442 Gene3D Transferase(Phosphotransferase) domain 1 183 435 - -
Seca3g09045 442 Pfam Protein kinase domain 145 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09045 442 PANTHER OS09G0572100 PROTEIN 1 442 - -
Seca3g09045 442 MobiDBLite consensus disorder prediction 1 73 - -
Seca3g09045 442 Gene3D Phosphorylase Kinase; domain 1 72 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09045 Seca-Chr3 228458254 228459582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09045 93 430 Receptor kinase-like Gene Family AT1G51940 30.145 6.63e-41 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Seca3g09045 Pkinase 2.9e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09045 - - gmx:100792694 638.262