Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09037 ATGAGTAGCTTAAGGCCTGAGTCTCATGTAGCACAGCAAATTCGGCGAGATAAATTGAGAATCCAGAATTTACAGGAATACCCTAATAATATAGAGCAATTGTCATTACACCCAGGGTTTAACATGGATCTTCTTCAAGTTAGGAGTGTTAGAAATGCTAACATGCTTGATGAACAAGCTGTTTATTCTTCACAAGTGCCAAACTTCTCAACCGCTTCAAATCCAAGGAACGCGTTGGAGTATCAGGATGAACCGAGCAGGCTAATGATGCATCAGTATGGTTCATTTCCTCATTCCTCATTGGTTGGTCTTCATTCTCCCCAAAAAGAACATTTGGAAAATTGGAGAAACAGTGCTCCCCAGCATCAAGGCTGTGATTGGGTTGTAAATTATGCAAACAGTTCTCTGGCAAACGGAAGCACCAACACCAACACTTTCTTGGCTGCTGAGCCAAACAATGTTGATGCTTACCAGCAACAGATGCATCCTCCATCTCCAATTTATCAGAATACATTACAGGAAATTGTCAAATCAGCTTCAGTGATGCAGCAAACTGGCCAAGGAATTTGGGGTGGGAGTAACAATGCTAGTGAACTTGAACTTCAATATGGAAACCAGCCTAATCAGTTGCGTTTTGGTTGGACAAATAGACAAATTGACAATAATACCCTTAACCCGCTGGGTTTCTCAGACAAAAAGGTTTATGAACACACTGGGCCTTTCATTTCTGATTCTAATCCTCAGAGCTTATCCTTATCGCTTTCATCTAATGCACAATCCAAGGCTCCTGTTTTTGAAGAGGGATCTGCATCAGATGATTCTCAATATCTGAAGCATGTGAAATCTATCATTTCTAGAGAGAGTGGGAAATCAGTTCAAGATCACACCGTGTTAAAGACTAGTTATCGGAATGTGGGCCCACTCGGCCCATTTACTGGGTATGCGACTATTCTTAAGAGTTCAAGGTTCTTAAAGACAGCCCAACAGTTGTTAGATGAGTTTTGTTGTTCGAAATTTGCGAAAACATGTGATGTTTCAGAGAGGGTCTCTCTCTCTAGAGAAGTTAGTGCTTCTACTTCAGCTGATACTGTCACTGTCAATGAAACTACTGGGGTTGCTTCAAAAGGTAGTAATTCAGGTTCTTCATCAATATCCTCCATGTTGTATATGTCAAAAGAAAACAGTGCTGATTGGGAGAAACGAAGTAGCTTTGGTGTTTCTTCACGGCCGGATTATCAACAGAAGAAAGCAAAGCTCCTGTACATGCAAGAGGAGGTCAATAGGAGATACAAGCAGTACCATCAACAAATGCAAATGGTTGTTGCATCCTTTGAATCAGTAGCGGGTCTTAGTTCAGCTACTCCTTACATCTCCTTGGCTTTTAAGTCAGTGTCAAAACAATTCAGGTGCCTAAACAATTCTATCTCAGATCAGCTCAAGGTTGTAAGTGAAGTGTTGGTGGAGGATGTGTCAATACCTACCACCAGTACTAGTAGTAAAGTTGACACTAATATGGCAAGGCTAAGGTGCATGGACCAAAGCTTTCAAAAGAACAAATCTGGAAGGGGTAGTACTGGCCTTATTGAAGCCCAACAACATGTGTGGAGGCCACAGAGAGGCTTACCAGAACGCTCAGTGGCAATTCTTAGAGCTTGGTTATTTGAACATTTTCTTCATCCTTACCCCACAGACATTGATAAACAAATGTTGGCTACTCAAACAGGTCTTTCTCGAAACCAGGTATCTAATTGGTTCATTAATGCTCGAGTTCGTGTGTGGAAGCCAATGGTTGAGGAAATACACATGCTTGAAACAAAAGCAACAGGTGGCAATGAGAATGAGGGAGCTTCTGGCACTGAAGGTGGTACCAGCCAGCCTAGAGTGGATAAGTCTCTGAGCAAGTTTGGTATGCATACAATACCTGAAAACCAATTTCATGGCATGGAAATGGATTCATCCATAGCTGTTGCCAACAATGAAGAAGAAAGAGGGATGTTAAATGCAGAACAATGGAGTCAAGAGAAGCGATCTAAATTGGAATGTCAAATGAGTTCAAGCATGGATGGGACACTGATGAGTTTTTTGCCATGCAGACATGGTGGACTTGAGGTTGGGGGACTTGGGTCTGTGTCACTGACATTGGGTCTGAGGCATGGTGTTGAAGGTGTACAGCACCAACAACAACAACTACAAGAGGAGCAGCTTAGGTGTCACCTTGGAGGGCAAATGATCCATGACTTTGTAGGCTGA 2250 0.4231 MSSLRPESHVAQQIRRDKLRIQNLQEYPNNIEQLSLHPGFNMDLLQVRSVRNANMLDEQAVYSSQVPNFSTASNPRNALEYQDEPSRLMMHQYGSFPHSSLVGLHSPQKEHLENWRNSAPQHQGCDWVVNYANSSLANGSTNTNTFLAAEPNNVDAYQQQMHPPSPIYQNTLQEIVKSASVMQQTGQGIWGGSNNASELELQYGNQPNQLRFGWTNRQIDNNTLNPLGFSDKKVYEHTGPFISDSNPQSLSLSLSSNAQSKAPVFEEGSASDDSQYLKHVKSIISRESGKSVQDHTVLKTSYRNVGPLGPFTGYATILKSSRFLKTAQQLLDEFCCSKFAKTCDVSERVSLSREVSASTSADTVTVNETTGVASKGSNSGSSSISSMLYMSKENSADWEKRSSFGVSSRPDYQQKKAKLLYMQEEVNRRYKQYHQQMQMVVASFESVAGLSSATPYISLAFKSVSKQFRCLNNSISDQLKVVSEVLVEDVSIPTTSTSSKVDTNMARLRCMDQSFQKNKSGRGSTGLIEAQQHVWRPQRGLPERSVAILRAWLFEHFLHPYPTDIDKQMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKATGGNENEGASGTEGGTSQPRVDKSLSKFGMHTIPENQFHGMEMDSSIAVANNEEERGMLNAEQWSQEKRSKLECQMSSSMDGTLMSFLPCRHGGLEVGGLGSVSLTLGLRHGVEGVQHQQQQLQEEQLRCHLGGQMIHDFVG. 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09037 749 CDD homeodomain 535 596 IPR001356 GO:0003677
Seca3g09037 749 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 222 617 - -
Seca3g09037 749 Pfam Homeobox KN domain 552 591 IPR008422 GO:0003677|GO:0006355
Seca3g09037 749 MobiDBLite consensus disorder prediction 610 630 - -
Seca3g09037 749 FunFam BEL1-like homeodomain protein 9 538 600 - -
Seca3g09037 749 Pfam Associated with HOX 317 476 IPR006563 -
Seca3g09037 749 SUPERFAMILY Homeodomain-like 537 602 IPR009057 -
Seca3g09037 749 SMART prehox3 312 477 IPR006563 -
Seca3g09037 749 SMART HOX_1 535 599 IPR001356 GO:0003677
Seca3g09037 749 Gene3D - 538 600 - -
Seca3g09037 749 ProSiteProfiles 'Homeobox' domain profile. 532 595 IPR001356 GO:0003677
Seca3g09037 749 MobiDBLite consensus disorder prediction 605 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09037 Seca-Chr3 228267295 228274394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09037 297 718 Homeobox Transcription Factor Family AT4G34610 36.054 2.65e-65 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca3g09037 POX 5.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09037 - - gmx:100790583 798.89