Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09029 ATGATGTTACGGCGTGAGGGAGAGAAGGGGAAGAGCAGCGAGTTGGACCCTTTGAAGTGGGAGGCGGCGGCGGAGTCGTTGAAGGGGAGTCATTTGGAGGAAGTGAAGAGGATGGTGGAGGATTACAGGAAGGAGGCGGTGAGGGTGGGAGGGGAGACGTTGACGGTGGGGGAGGTGGCAGCGGTGGCAGAGAGGCGGGTGGCGGTGGAACTGAACGAGGCGGCGAGGGTGAGAGTGAAGGCAAGCAGTGAGTGGGTGATGGAAAGCATGCACAATGGGACTGATTGTTATGGGGTCACTACTGGCTTTGGTTCCACCTCACATAGAAGAACCACACAGGGTTTTGCCCTCCAAACTGAACTCATTAGGTTTTTGAATGCTGGAATTTTTGGGAATGAGGCAGAAGCATGCCATACTTTGCCACGCACTGCAACAAGAGCTGCAATGCTGGTAAGAGTGAATACCCTTCTTCAAGGCTACTCTGGCATTAGATATGAGATACTAGAAGCCATTGCAAAACTGCTCAATCACAGCATCACACCATGCTTGCCATTGCGTGGTTCAATTTCAGCCTCAGGGGACTTGGTTCCATTTTCATACATTGCTGGACTCCTGACAGGGAAGCCAAATTCAAAGGCCATTGGACCCAATGGTGACTCCCTAAGTGCTGCAGAAGCTTTCCATGTAGCTGGTATTAGTGGGGGCTGCTTTAAGTTGCAACCCAAGGAGGGTCTTGCACTTGTTAATGGAACTGGGGTTGGAGCTGGTTTAGCTTCTATAGTTCTATTTGAGGCTAACATCTTAACCATCTTATCTGAAGTCATGTCTGCCATTTTTGCTGAAGTCATGCAAGGAAAGCCAGAGTTTACAGACCATTTGACTCACAAATTGAAACACCATCCTGGTCAGATTGAGGCTGCAGCAGTTATGGAACATATCTTGCATGGAAGTGCTTATGTTAAAGCAGCACAAAAGTTACATGAGATAGACCCTTTCCAAAAGCCTAAGCAAGACAGATATGCTCTTAGGACTTCACCACAATGGTTAGGTCCTCAAATTGAAGTTATTCGGTCATCAACAAAATCAATTGAAAGGGAGATCAATTCTGTGAATGATAACCCTTTGATTGATGTATCAAGGAACAAAGCTTTACATGGTGGCAATTTTCAGGGCACCCCAGTAGGGGTTTCTATGGACAACACAAGATTAGCTTTGGCTGCCATTGGAAAACTCCTGTTTGCTCAAATGTCTGAGTTGGTTAATGATTTCTACAATAATGGTTTGCCTTCAAATCTCTCAGGAGGTCACTGTCCAAGCTTGGACTATGGATTTAAGGGTGGTGAGATAGCAATGGCTGCATATTGTTCTGAGCTTCAGTATCTAGCAAACCCTGTTACTAATCACGTGCAAAGTGCAGAACAACACAATCAAGATGTGAATTCTCTGGGTCTAATCTCTGCAAGGAAAAGCTGA 1473 0.465 MMLRREGEKGKSSELDPLKWEAAAESLKGSHLEEVKRMVEDYRKEAVRVGGETLTVGEVAAVAERRVAVELNEAARVRVKASSEWVMESMHNGTDCYGVTTGFGSTSHRRTTQGFALQTELIRFLNAGIFGNEAEACHTLPRTATRAAMLVRVNTLLQGYSGIRYEILEAIAKLLNHSITPCLPLRGSISASGDLVPFSYIAGLLTGKPNSKAIGPNGDSLSAAEAFHVAGISGGCFKLQPKEGLALVNGTGVGAGLASIVLFEANILTILSEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAVMEHILHGSAYVKAAQKLHEIDPFQKPKQDRYALRTSPQWLGPQIEVIRSSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPVGVSMDNTRLALAAIGKLLFAQMSELVNDFYNNGLPSNLSGGHCPSLDYGFKGGEIAMAAYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISARKS. 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09029 490 Pfam Aromatic amino acid lyase 54 489 IPR001106 -
Seca3g09029 490 SUPERFAMILY L-aspartase-like 16 489 IPR008948 GO:0003824
Seca3g09029 490 CDD PAL-HAL 52 489 IPR001106 -
Seca3g09029 490 Gene3D Fumarase/aspartase (Central domain) 252 490 - -
Seca3g09029 490 FunFam Phenylalanine ammonia-lyase 8 251 - -
Seca3g09029 490 Gene3D - 8 251 IPR024083 -
Seca3g09029 490 NCBIfam phenylalanine ammonia-lyase 16 490 IPR005922 GO:0005737|GO:0006559|GO:0016841
Seca3g09029 490 PANTHER HISTIDINE AMMONIA-LYASE 16 489 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09029 Seca-Chr3 228099811 228101785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09029 16 490 Monolignol Biosynthesis Gene Families AT3G10340 81.381 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09029 K10775 - cave:132187588 790.03