Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09026 ATGAAGCCTCAACTCAAAGTTGGTATTGCTCTTGTCATTAGCTTGCTCTGGATTCAGCAATCATTTTGTGATGAACCTTCTGATACTGGCCTAAACAAGTGGAGATGTAGATGTTCTTCTTTCCAAGGGAACCAGAGATACTCTCTTTCTAATTGTTCTAAGTCATGTGATTGCCATTCAGATGTAACCTGCTTTACCTTCCATGTAGATGCTGAAGAGAGTGCATCCATATGGACATGTATATGTGATTCGAATGGGTTTCCTGAAGTGACAGCAGGTGGCCATAATCCTAATTGCTTTAATGCCTGCAACTGCACCTGGGGAACTGTTAGGATGCCACTGGGTTCAAAGAAACACATTTTGAGCAAGATTGTAGTAGTTATTCTAATTGTATGTGCCATATGCATAACTATTGCATTTCTTGCCTCAGTTACATGTTATGTCTGCCGAAGGGAGAGATGTCCTATTCAATCACCAATGATCTCATCAGATAAGGAAATGAGTTACAGTAGTAGCACCAACTTATTTAGTCATAGGACTTCTTCAGTGCAAGTCACTATAAATTCTCCTATTAGTCATATTGCAGGATGCTTTCAGAAGGCCTCTTTCTTGTTTGGGAGCCAAAAAGAAACTTTTCATGGAAGTATTATTCAATTTTCATTTGCTGAATTGGAAAATGCCACTGAAAATTTTTCAGCTTCCAACCTAATTGGACTAGGTGGAAGTAGTTATGTATACCGTGGTTGGCTAAAAGATGGTAGCAATGTGGCAGTCAAGAGACTAAAAGATCAAAGAGGGCCTGAAGCAGACTCTGAATTTTTTACTGAGATTGAACTATTATCTAGGCTTCACCATTGTCATCTGGTGCCACTGATTGGATATTGCTCAGAATTAAAAGGAAAAAATGTTCAGAGGTTACTAGTGTTTGACTACATGAGTAATGGCAATTTGAGGGACCGTTTAGATGGAATTTTTGGAAAAAACATGGATTGGGCTACTCGTGTTACAATTGCATTAGGAGCTGCAAGGGGTTTGGAGTATCTTCATGAGGCAGCTGCTCCTAGAATTCTGCACAGAGATGTCAAATCAACAAACATTCTTCTGGATAAAAATTGGCAAGCAAAAATAACTGATCTTGGTATGGCTAAAAACTTGATAGCTGATGACCTCCCCAGTTGTTCAGATTCTCCAGAAAGAATGAAGGGGACATTTGGCTATTTTGCACCTGAGTATGCAATTATAGGGAGAGCCTCTCTTGAGTCTGATGTCTTCAGTTTTGGGGTGGTTCTTCTTGAGCTTATCAGTGGTCGGCAACCCATCCATAAATCTGCTGGCAAAGAAGAAAGCCTTGTTATATGGGCTACTCCTCGCTTAGAGGATAGTAGGCGAGTAATAACAGAGTTGGCTGATCCACAATTAAAAGGAAAATTCCCAGAAGAAGAGGTGCAGATAATGGCATACTTAGCAAAGGAGTGTTTGCTTTTAGATCCTGACACTAGACCAACTATGAGTGAAGTTGTTCATATTCTTTCAAGTATTTCACCAGGAAGATCTAGAAGGAGAAGAAACATTCCAGTGGGGCTTTTTCAGGAAGCAGAGGACGTAGACAAGCAAAAGCAGGCTCCATTGAGTAGATTTCCAGCTTGTAATTTATTGCCACTAGGTATTGAGAACAATCTTAGTGTTGGAAATGAAAATAAAGATGTAGATAAAGTTTCAACTGAGTATAGGGAGAGTTTGATCCTCTTGACTTCAAAAGGTGAGAAGAACTGGCATGCATCAGAAGAGGAAATGGTAGACCTAACAGAACCTCGGTTTGAATCATTTTGCATGGCAAACGTCAACAATTTCCCTTGA 1857 0.399 MKPQLKVGIALVISLLWIQQSFCDEPSDTGLNKWRCRCSSFQGNQRYSLSNCSKSCDCHSDVTCFTFHVDAEESASIWTCICDSNGFPEVTAGGHNPNCFNACNCTWGTVRMPLGSKKHILSKIVVVILIVCAICITIAFLASVTCYVCRRERCPIQSPMISSDKEMSYSSSTNLFSHRTSSVQVTINSPISHIAGCFQKASFLFGSQKETFHGSIIQFSFAELENATENFSASNLIGLGGSSYVYRGWLKDGSNVAVKRLKDQRGPEADSEFFTEIELLSRLHHCHLVPLIGYCSELKGKNVQRLLVFDYMSNGNLRDRLDGIFGKNMDWATRVTIALGAARGLEYLHEAAAPRILHRDVKSTNILLDKNWQAKITDLGMAKNLIADDLPSCSDSPERMKGTFGYFAPEYAIIGRASLESDVFSFGVVLLELISGRQPIHKSAGKEESLVIWATPRLEDSRRVITELADPQLKGKFPEEEVQIMAYLAKECLLLDPDTRPTMSEVVHILSSISPGRSRRRRNIPVGLFQEAEDVDKQKQAPLSRFPACNLLPLGIENNLSVGNENKDVDKVSTEYRESLILLTSKGEKNWHASEEEMVDLTEPRFESFCMANVNNFP. 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09026 618 PANTHER OS01G0750732 PROTEIN 63 515 - -
Seca3g09026 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 356 368 IPR008271 GO:0004672|GO:0006468
Seca3g09026 618 Gene3D Phosphorylase Kinase; domain 1 205 311 - -
Seca3g09026 618 ProSiteProfiles Protein kinase domain profile. 231 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09026 618 FunFam receptor-like serine/threonine-protein kinase NCRK 312 522 - -
Seca3g09026 618 Pfam Protein kinase domain 233 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09026 618 CDD STKc_IRAK 237 513 - -
Seca3g09026 618 SUPERFAMILY Protein kinase-like (PK-like) 211 510 IPR011009 -
Seca3g09026 618 ProSitePatterns Protein kinases ATP-binding region signature. 237 259 IPR017441 GO:0005524
Seca3g09026 618 SMART serkin_6 231 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09026 618 Gene3D Transferase(Phosphotransferase) domain 1 312 525 - -
Seca3g09026 618 FunFam receptor-like serine/threonine-protein kinase NCRK 205 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09026 Seca-Chr3 227994204 228002376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09026 1 614 Receptor kinase-like Gene Family AT2G28250 53.548 0.0 596
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Seca3g09026 Pkinase 2.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09026 - - gmx:100499641 991.104